1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. evm.model.tig00022075.82

evm.model.tig00022075.82


Description : (at4g36050 : 137.0) endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: zinc ion binding, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808), Zinc finger, GRF-type (InterPro:IPR010666); BEST Arabidopsis thaliana protein match is: apurinic endonuclease-redox protein (TAIR:AT2G41460.1); Has 8559 Blast hits to 7505 proteins in 2283 species: Archae - 114; Bacteria - 4844; Metazoa - 586; Fungi - 501; Plants - 129; Viruses - 2; Other Eukaryotes - 2383 (source: NCBI BLink). & (p51173|apea_dicdi : 104.0) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) (Class II apurinic/apyrimidinic(AP)-endonuclease) - Dictyostelium discoideum (Slime mold) & (reliability: 274.0) & (original description: no original description)


Gene families : OG_42_0004073 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004073_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00022075.82

Target Alias Description ECC score Gene Family Method Actions
421761 No alias Function unknown 0.03 Orthogroups_2024-Update
Solyc03g033530 No alias DNA-(apurinic or apyrimidinic site) lyase (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004619 phosphoglycerate mutase activity IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
MF GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR005135 Endo/exonuclease/phosphatase 4 243
No external refs found!