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  5. Solyc05g051410

Solyc05g051410


Description : cyclinD4_2


Gene families : OG_42_0000136 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000136_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g051410
Cluster HCCA clusters: Cluster_182

Target Alias Description ECC score Gene Family Method Actions
At2g22490 No alias Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3] 0.03 Orthogroups_2024-Update
Bradi4g29467 No alias CYCLIN D1;1 0.02 Orthogroups_2024-Update
GRMZM2G047637 No alias CYCLIN D1;1 0.02 Orthogroups_2024-Update
Glyma.12G199300 No alias Cyclin D6;1 0.04 Orthogroups_2024-Update
PSME_00024235-RA No alias (at4g34160 : 108.0) encodes a cyclin D-type protein... 0.04 Orthogroups_2024-Update
PSME_00034952-RA No alias (at4g34160 : 221.0) encodes a cyclin D-type protein... 0.03 Orthogroups_2024-Update
Potri.005G157800 No alias CYCLIN D4;1 0.03 Orthogroups_2024-Update
Potri.007G055300 No alias cyclin d5;1 0.03 Orthogroups_2024-Update
Solyc05g006050 No alias cyclinD1_1 0.03 Orthogroups_2024-Update
Sopen03g002680 No alias Cyclin, N-terminal domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0004017 adenylate kinase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 193 284
IPR006671 Cyclin_N 59 189
No external refs found!