Solyc05g053430


Description : DNA-directed RNA polymerase subunit (AHRD V3.3 *** K4C223_SOLLC)


Gene families : OG_42_0002136 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002136_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g053430
Cluster HCCA clusters: Cluster_287

Target Alias Description ECC score Gene Family Method Actions
Bradi4g04820 No alias RNA polymerases M/15 Kd subunit 0.03 Orthogroups_2024-Update
LOC_Os12g37370 No alias DNA-directed RNA polymerase II subunit RPB9, putative, expressed 0.03 Orthogroups_2024-Update
Seita.3G335700.1 No alias component *(NRPE9) of RNA polymerase V complex &... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
InterPro domains Description Start Stop
IPR001222 Znf_TFIIS 75 113
IPR001529 DNA-dir_RNA_pol_M/15kDasu 4 40
No external refs found!