Solyc05g053600

Description : Pleiotropic drug resistance ABC transporter (AHRD V3.3 *** W0TUG3_ACAMN)

Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc05g053600
Cluster	HCCA clusters: Cluster_151

Target	Alias	Description	ECC score	Gene Family Method
A4A49_09052	No alias	pleiotropic drug resistance protein 1	0.03	Orthogroups_2024-Update
A4A49_23886	No alias	pleiotropic drug resistance protein 1	0.03	Orthogroups_2024-Update
Glyma.03G168000	No alias	pleiotropic drug resistance 12	0.03	Orthogroups_2024-Update
Glyma.17G039300	No alias	pleiotropic drug resistance 9	0.03	Orthogroups_2024-Update
Glyma.19G169400	No alias	pleiotropic drug resistance 12	0.03	Orthogroups_2024-Update
LOC_Os09g16330	No alias	pleiotropic drug resistance protein, putative, expressed	0.03	Orthogroups_2024-Update
Seita.2G152000.1	No alias	subfamily ABCG transporter	0.02	Orthogroups_2024-Update
Seita.5G221600.1	No alias	subfamily ABCG transporter	0.03	Orthogroups_2024-Update
Sobic.002G203800.1	No alias	subfamily ABCG transporter	0.02	Orthogroups_2024-Update
Sobic.003G215800.1	No alias	subfamily ABCG transporter	0.02	Orthogroups_2024-Update
Sobic.003G216000.1	No alias	subfamily ABCG transporter	0.03	Orthogroups_2024-Update
Sobic.005G183900.1	No alias	subfamily ABCG transporter	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0008144	drug binding	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0032182	ubiquitin-like protein binding	IEP	Predicted GO
MF	GO:0043130	ubiquitin binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	844	996
IPR003439	ABC_transporter-like	167	349
IPR013581	PDR_assoc	720	782
IPR013525	ABC_2_trans	1141	1355
IPR013525	ABC_2_trans	503	715
IPR029481	ABC_trans_N	79	142

External Links

No external refs found!