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  5. Solyc05g053670

Solyc05g053670


Description : 60S ribosomal protein L13a-like protein (AHRD V3.3 *** Q3HRW1_SOLTU)


Gene families : OG_42_0002020 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g053670
Cluster HCCA clusters: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
166650 No alias Ribosomal protein L13 family protein 0.14 Orthogroups_2024-Update
A4A49_14824 No alias 60s ribosomal protein l13a-4 0.05 Orthogroups_2024-Update
A4A49_55645 No alias 60s ribosomal protein l13a-4 0.15 Orthogroups_2024-Update
At3g24830 No alias 60S ribosomal protein L13a-2... 0.05 Orthogroups_2024-Update
At4g13170 No alias 60S ribosomal protein L13a-3... 0.12 Orthogroups_2024-Update
Bradi1g08260 No alias Ribosomal protein L13 family protein 0.14 Orthogroups_2024-Update
Bradi1g59280 No alias Ribosomal protein L13 family protein 0.08 Orthogroups_2024-Update
Brara.B03455.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.18 Orthogroups_2024-Update
Brara.C03976.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.26 Orthogroups_2024-Update
Brara.F02982.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.3 Orthogroups_2024-Update
Brara.G00660.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.28 Orthogroups_2024-Update
Brara.I00372.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.18 Orthogroups_2024-Update
Brara.I01172.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.19 Orthogroups_2024-Update
Cre12.g532550 No alias Ribosomal protein L13 family protein 0.27 Orthogroups_2024-Update
Glyma.08G353900 No alias Ribosomal protein L13 family protein 0.06 Orthogroups_2024-Update
Glyma.08G354000 No alias Ribosomal protein L13 family protein 0.12 Orthogroups_2024-Update
Glyma.09G024000 No alias Ribosomal protein L13 family protein 0.22 Orthogroups_2024-Update
Glyma.15G130000 No alias Ribosomal protein L13 family protein 0.04 Orthogroups_2024-Update
Glyma.16G092800 No alias Ribosomal protein L13 family protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G063880.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
HORVU5Hr1G096060.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Kfl00360_0020 kfl00360_0020_v1.1 (at3g07110 : 303.0) Ribosomal protein L13 family... 0.06 Orthogroups_2024-Update
LOC_Os03g54890 No alias ribosomal protein L13, putative, expressed 0.02 Orthogroups_2024-Update
MA_186340g0010 No alias (at3g24830 : 331.0) Ribosomal protein L13 family... 0.1 Orthogroups_2024-Update
Mp2g08690.1 No alias component RPL13a of LSU proteome component 0.06 Orthogroups_2024-Update
Mp4g15790.1 No alias component RPL13a of LSU proteome component 0.03 Orthogroups_2024-Update
PSME_00002229-RA No alias (at3g24830 : 323.0) Ribosomal protein L13 family... 0.13 Orthogroups_2024-Update
Potri.002G242600 No alias Ribosomal protein L13 family protein 0.12 Orthogroups_2024-Update
Potri.017G054600 No alias Ribosomal protein L13 family protein 0.05 Orthogroups_2024-Update
Pp1s165_40V6 No alias 60s ribosomal protein 0.28 Orthogroups_2024-Update
Pp1s174_48V6 No alias 60s ribosomal protein 0.32 Orthogroups_2024-Update
Pp1s63_162V6 No alias 60s ribosomal protein 0.24 Orthogroups_2024-Update
Pp1s75_223V6 No alias 60s ribosomal protein 0.09 Orthogroups_2024-Update
Pp1s80_110V6 No alias 60s ribosomal protein 0.28 Orthogroups_2024-Update
Seita.9G087700.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.25 Orthogroups_2024-Update
Sobic.001G085400.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.24 Orthogroups_2024-Update
Sobic.009G022400.1 No alias component *(uL13) of large ribosomal-subunit (LSU) proteome 0.25 Orthogroups_2024-Update
Sopen05g032170 No alias Ribosomal protein L13 0.31 Orthogroups_2024-Update
Sopen09g034630 No alias Ribosomal protein L13 0.28 Orthogroups_2024-Update
Sopen12g033110 No alias Ribosomal protein L13 0.17 Orthogroups_2024-Update
evm.model.contig_3478.11 No alias (at3g24830 : 235.0) Ribosomal protein L13 family... 0.29 Orthogroups_2024-Update
evm.model.tig00000792.29 No alias (at3g24830 : 242.0) Ribosomal protein L13 family... 0.1 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 34 118
No external refs found!