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  5. Solyc05g054070

Solyc05g054070


Description : 60S ribosomal protein L6 (AHRD V3.3 *** RL6_MESCR)


Gene families : OG_42_0002426 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002426_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g054070
Cluster HCCA clusters: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
270686 No alias Ribosomal protein L6 family protein 0.12 Orthogroups_2024-Update
A4A49_32163 No alias 60s ribosomal protein l6-1 0.04 Orthogroups_2024-Update
At1g18540 No alias 60S ribosomal protein L6-1... 0.05 Orthogroups_2024-Update
Bradi3g08900 No alias Ribosomal protein L6 family protein 0.09 Orthogroups_2024-Update
Bradi3g47410 No alias Ribosomal protein L6 family protein 0.07 Orthogroups_2024-Update
Brara.B02104.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Brara.H02417.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.16 Orthogroups_2024-Update
Brara.I04782.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.18 Orthogroups_2024-Update
Cre01.g011000 No alias Ribosomal protein L6 family protein 0.13 Orthogroups_2024-Update
GRMZM2G024647 No alias Ribosomal protein L6 family protein 0.04 Orthogroups_2024-Update
Glyma.05G184000 No alias Ribosomal protein L6 family protein 0.15 Orthogroups_2024-Update
Glyma.08G141700 No alias Ribosomal protein L6 family protein 0.08 Orthogroups_2024-Update
Glyma.08G141800 No alias Ribosomal protein L6 family protein 0.04 Orthogroups_2024-Update
Glyma.08G151900 No alias Ribosomal protein L6 family protein 0.07 Orthogroups_2024-Update
Glyma.15G271300 No alias Ribosomal protein L6 family protein 0.18 Orthogroups_2024-Update
HORVU6Hr1G041750.3 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
HORVU6Hr1G052600.3 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Kfl00488_0040 kfl00488_0040_v1.1 (p34091|rl6_mescr : 230.0) 60S ribosomal protein L6... 0.08 Orthogroups_2024-Update
LOC_Os02g37862 No alias 60S ribosomal protein L6, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g39700 No alias 60S ribosomal protein L6, putative, expressed 0.05 Orthogroups_2024-Update
MA_108607g0010 No alias (p34091|rl6_mescr : 343.0) 60S ribosomal protein L6... 0.08 Orthogroups_2024-Update
PSME_00031628-RA No alias (p34091|rl6_mescr : 312.0) 60S ribosomal protein L6... 0.04 Orthogroups_2024-Update
PSME_00044973-RA No alias (p34091|rl6_mescr : 327.0) 60S ribosomal protein L6... 0.11 Orthogroups_2024-Update
Potri.009G065800 No alias Ribosomal protein L6 family protein 0.07 Orthogroups_2024-Update
Pp1s59_122V6 No alias 60s ribosomal protein 0.13 Orthogroups_2024-Update
Seita.1G214900.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.19 Orthogroups_2024-Update
Seita.7G134600.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Sobic.004G198400.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.16 Orthogroups_2024-Update
Sobic.006G116700.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.21 Orthogroups_2024-Update
Solyc04g014720 No alias 60S ribosomal protein L6 (AHRD V3.3 *** RL6_MESCR) 0.04 Orthogroups_2024-Update
Sopen05g032560 No alias Ribosomal protein L6e 0.24 Orthogroups_2024-Update
Sopen11g006900 No alias Ribosomal protein L6e 0.23 Orthogroups_2024-Update
evm.model.contig_2016.11 No alias (p34091|rl6_mescr : 131.0) 60S ribosomal protein L6... 0.2 Orthogroups_2024-Update
evm.model.tig00021127.127 No alias (at1g74050 : 196.0) Ribosomal protein L6 family protein;... 0.19 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0019107 myristoyltransferase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR000915 60S_ribosomal_L6E 122 229
IPR005568 Ribosomal_L6_N 5 57
No external refs found!