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  5. Solyc05g054660

Solyc05g054660


Description : Zinc finger family protein (AHRD V3.3 *** B9HM54_POPTR)


Gene families : OG_42_0000046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g054660
Cluster HCCA clusters: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
A4A49_01661 No alias zinc finger protein zat10 0.02 Orthogroups_2024-Update
Bradi4g09410 No alias C2H2-type zinc finger family protein 0.02 Orthogroups_2024-Update
Brara.B01066.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Brara.C00112.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Brara.F02478.1 No alias C2H2-type subclass ZAT transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G002805 No alias C2H2-type zinc finger family protein 0.03 Orthogroups_2024-Update
GRMZM2G035103 No alias salt tolerance zinc finger 0.02 Orthogroups_2024-Update
GRMZM2G112251 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G361210 No alias C2H2-type zinc finger family protein 0.02 Orthogroups_2024-Update
Glyma.06G201200 No alias C2H2-like zinc finger protein 0.04 Orthogroups_2024-Update
Glyma.10G045300 No alias C2H2-type zinc finger family protein 0.02 Orthogroups_2024-Update
Glyma.11G084900 No alias zinc finger (C2H2 type) family protein 0.05 Orthogroups_2024-Update
Glyma.18G287200 No alias C2H2 and C2HC zinc fingers superfamily protein 0.05 Orthogroups_2024-Update
HORVU3Hr1G086790.2 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os03g60570 No alias ZOS3-22 - C2H2 zinc finger protein, expressed 0.01 Orthogroups_2024-Update
MA_101494g0010 No alias (at1g02040 : 99.8) C2H2-type zinc finger family protein;... 0.02 Orthogroups_2024-Update
MA_19127g0010 No alias (at1g02040 : 100.0) C2H2-type zinc finger family... 0.03 Orthogroups_2024-Update
MA_23050g0010 No alias (at2g45120 : 95.1) C2H2-like zinc finger protein;... 0.04 Orthogroups_2024-Update
MA_70076g0010 No alias (at1g02040 : 115.0) C2H2-type zinc finger family... 0.02 Orthogroups_2024-Update
MA_85675g0010 No alias (at1g02040 : 116.0) C2H2-type zinc finger family... 0.03 Orthogroups_2024-Update
MA_858691g0010 No alias (at1g02040 : 88.2) C2H2-type zinc finger family protein;... 0.02 Orthogroups_2024-Update
MA_9316262g0010 No alias (at2g45120 : 86.3) C2H2-like zinc finger protein;... 0.03 Orthogroups_2024-Update
PSME_00025745-RA No alias (at2g45120 : 107.0) C2H2-like zinc finger protein;... 0.06 Orthogroups_2024-Update
PSME_00056793-RA No alias (at1g02040 : 87.8) C2H2-type zinc finger family protein;... 0.02 Orthogroups_2024-Update
Potri.009G089400 No alias salt tolerance zinc finger 0.03 Orthogroups_2024-Update
Seita.3G062700.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
Seita.8G248000.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
Seita.9G034400.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G035000.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G330200.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
Solyc01g107170 No alias Zinc finger protein (AHRD V3.3 *** A0T3Q5_SOLTU) 0.03 Orthogroups_2024-Update
Solyc06g005180 No alias LOW QUALITY:Zinc finger family protein (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Sopen05g033130 No alias C2H2-type zinc finger 0.03 Orthogroups_2024-Update
Sopen11g030730 No alias C2H2-type zinc finger 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!