Solyc05g055020

Description : LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) (AHRD V3.3 *** AT5G28490.1)

Gene families : OG_42_0000294 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000294_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc05g055020
Cluster	HCCA clusters: Cluster_274

Target	Alias	Description	ECC score	Gene Family Method
At1g07090	No alias	LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]	0.02	Orthogroups_2024-Update
At5g58500	No alias	LSH5 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N9]	0.03	Orthogroups_2024-Update
Brara.A02658.1	No alias	plant-specific ALOG-type transcription factor	0.03	Orthogroups_2024-Update
Brara.D01881.1	No alias	plant-specific ALOG-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G147241	No alias	Protein of unknown function (DUF640)	0.02	Orthogroups_2024-Update
Seita.1G239200.1	No alias	plant-specific ALOG-type transcription factor	0.02	Orthogroups_2024-Update
Seita.7G166800.1	No alias	plant-specific ALOG-type transcription factor	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	Predicted GO
MF	GO:0004222	metalloendopeptidase activity	IEP	Predicted GO
MF	GO:0005509	calcium ion binding	IEP	Predicted GO
BP	GO:0007165	signal transduction	IEP	Predicted GO
MF	GO:0008237	metallopeptidase activity	IEP	Predicted GO
MF	GO:0043169	cation binding	IEP	Predicted GO
MF	GO:0046872	metal ion binding	IEP	Predicted GO
BP	GO:0050789	regulation of biological process	IEP	Predicted GO
BP	GO:0050794	regulation of cellular process	IEP	Predicted GO
BP	GO:0065007	biological regulation	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006936	ALOG_dom	35	154

External Links

No external refs found!