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  5. Solyc05g055440

Solyc05g055440


Description : Histone H2B (AHRD V3.3 *** K4C2M0_SOLLC)


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g055440
Cluster HCCA clusters: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
426757 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
A4A49_60323 No alias putative histone h2b.1 0.03 Orthogroups_2024-Update
At2g37470 No alias Histone H2B.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUS0] 0.04 Orthogroups_2024-Update
At3g09480 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V4X7] 0.03 Orthogroups_2024-Update
At3g45980 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6] 0.05 Orthogroups_2024-Update
At3g46030 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178VGU6] 0.04 Orthogroups_2024-Update
At3g53650 No alias Histone H2B.8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFF6] 0.02 Orthogroups_2024-Update
At5g22880 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:Q1H5F7] 0.02 Orthogroups_2024-Update
Bradi1g08860 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g66380 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g27760 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Brara.B01057.1 No alias histone *(H2B) 0.07 Orthogroups_2024-Update
Brara.F01827.1 No alias histone *(H2B) 0.09 Orthogroups_2024-Update
Brara.G01398.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
Brara.I03652.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
Brara.J01359.1 No alias histone *(H2B) 0.06 Orthogroups_2024-Update
Brara.J01445.1 No alias histone *(H2B) 0.05 Orthogroups_2024-Update
Cre06.g264800 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g264900 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g266750 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g271376 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Cre06.g273850 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g274250 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g274750 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g276900 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g504550 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g504700 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre12.g505600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g506200 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre13.g570050 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre17.g708600 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre17.g711750 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G046841 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G071959 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G141432 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G305027 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G306258 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G401147 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
GRMZM2G472696 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.10G198500 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.11G141600 No alias Histone superfamily protein 0.08 Orthogroups_2024-Update
Glyma.11G141800 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.11G142100 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.12G065100 No alias Histone superfamily protein 0.08 Orthogroups_2024-Update
Glyma.12G065200 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G065400 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.13G132100 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G173400 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.20G191600 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G056530.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
HORVU1Hr1G058440.4 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU1Hr1G078480.6 No alias histone *(H2B) 0.06 Orthogroups_2024-Update
HORVU1Hr1G085540.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
HORVU3Hr1G013530.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
HORVU3Hr1G013680.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
HORVU3Hr1G086610.4 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
HORVU4Hr1G009040.2 No alias histone *(H2B) 0.05 Orthogroups_2024-Update
HORVU5Hr1G094500.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
HORVU7Hr1G110310.1 No alias histone *(H2B) 0.05 Orthogroups_2024-Update
Kfl01110_0020 kfl01110_0020_v1.... (p16868|h2b4_volca : 167.0) Histone H2B.4 (H2B-IV) -... 0.03 Orthogroups_2024-Update
MA_10428006g0010 No alias (at3g45980 : 145.0) Encodes a histone 2B (H2B) protein.... 0.02 Orthogroups_2024-Update
MA_10435143g0020 No alias (at3g45980 : 145.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
MA_10436516g0010 No alias (at3g45980 : 175.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
MA_9293473g0010 No alias (at5g22880 : 173.0) Encodes a histone 2B (H2B) protein.... 0.02 Orthogroups_2024-Update
Mp4g13450.1 No alias histone (H2B) 0.03 Orthogroups_2024-Update
Mp6g07010.1 No alias histone (H2B) 0.02 Orthogroups_2024-Update
PSME_00000376-RA No alias (p54347|h2b4_chlre : 153.0) Histone H2B.4 (H2B-IV) -... 0.03 Orthogroups_2024-Update
PSME_00025825-RA No alias (at5g22880 : 173.0) Encodes a histone 2B (H2B) protein.... 0.02 Orthogroups_2024-Update
Sobic.003G200501.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Sobic.004G265400.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Sopen03g019890 No alias Core histone H2A/H2B/H3/H4 0.08 Orthogroups_2024-Update
Sopen05g033890 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen06g031230 No alias Core histone H2A/H2B/H3/H4 0.11 Orthogroups_2024-Update
Sopen06g032230 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen11g003790 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen11g003800 No alias Core histone H2A/H2B/H3/H4 0.11 Orthogroups_2024-Update
Sopen11g026180 No alias Core histone H2A/H2B/H3/H4 0.09 Orthogroups_2024-Update
Sopen12g006850 No alias Core histone H2A/H2B/H3/H4 0.07 Orthogroups_2024-Update
evm.model.contig_498.4 No alias (p16868|h2b4_volca : 127.0) Histone H2B.4 (H2B-IV) -... 0.02 Orthogroups_2024-Update
evm.model.tig00000944.18 No alias (p16868|h2b4_volca : 122.0) Histone H2B.4 (H2B-IV) -... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0043138 3'-5' DNA helicase activity IEP Predicted GO
MF GO:0043140 ATP-dependent 3'-5' DNA helicase activity IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 5 123
No external refs found!