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  5. Solyc05g055500

Solyc05g055500


Description : LOW QUALITY:Zinc finger family protein (AHRD V3.3 *** D7LXI3_ARALL)


Gene families : OG_42_0000046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g055500
Cluster HCCA clusters: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
At3g49930 No alias At3g49930 [Source:UniProtKB/TrEMBL;Acc:Q9SN24] 0.02 Orthogroups_2024-Update
Bradi1g07660 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
PSME_00056418-RA No alias (at1g02040 : 111.0) C2H2-type zinc finger family... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!