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  5. Solyc05g055510

Solyc05g055510


Description : Pectate lyase (AHRD V3.3 *** K4C2M7_SOLLC)


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g055510
Cluster HCCA clusters: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
A4A49_12542 No alias pectate lyase 0.04 Orthogroups_2024-Update
A4A49_16801 No alias putative pectate lyase 1 0.04 Orthogroups_2024-Update
A4A49_31246 No alias putative pectate lyase 12 0.02 Orthogroups_2024-Update
A4A49_35525 No alias putative pectate lyase 16 0.02 Orthogroups_2024-Update
Glyma.04G173900 No alias Pectate lyase family protein 0.04 Orthogroups_2024-Update
Glyma.18G012200 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
Glyma.19G053800 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
MA_10353668g0010 No alias (at4g24780 : 563.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
MA_10433252g0010 No alias (at3g24670 : 194.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
MA_10437227g0010 No alias (at4g24780 : 367.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Potri.008G032700 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.011G008100 No alias root hair specific 14 0.02 Orthogroups_2024-Update
Solyc03g113150 No alias Pectate lyase (AHRD V3.3 *** K4BKG8_SOLLC) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 153 337
No external refs found!