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  5. Solyc06g005240

Solyc06g005240


Description : Ankyrin repeat family protein (AHRD V3.3 *** AT1G07710.2)


Gene families : OG_42_0000679 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000679_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g005240
Cluster HCCA clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
PSME_00054385-RA No alias (at3g09550 : 370.0) Ankyrin repeat family protein;... 0.03 Orthogroups_2024-Update
Solyc10g084550 No alias YELLOW STRIPE like 3 (AHRD V3.3 --* AT5G53550.6) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR026961 PGG_dom 334 448
IPR020683 Ankyrin_rpt-contain_dom 216 278
IPR020683 Ankyrin_rpt-contain_dom 150 209
IPR020683 Ankyrin_rpt-contain_dom 78 141
No external refs found!