1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g005560

Solyc06g005560


Description : expansin9


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g005560
Cluster HCCA clusters: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
102623 No alias expansin A15 0.02 Orthogroups_2024-Update
Bradi5g19340 No alias expansin A13 0.06 Orthogroups_2024-Update
Brara.B03141.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.D02404.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.E00745.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
GRMZM2G450546 No alias expansin 11 0.03 Orthogroups_2024-Update
PSME_00017836-RA No alias (at1g26770 : 414.0) Encodes an expansin. Naming... 0.05 Orthogroups_2024-Update
Solyc09g018020 No alias Expansin (AHRD V3.3 *** G4XZW3_9GENT) 0.04 Orthogroups_2024-Update
Sopen02g025850 No alias Pollen allergen 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 171 248
IPR009009 RlpA-like_DPBB 74 160
No external refs found!