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  5. Solyc06g005710

Solyc06g005710


Description : Protein plastid transcriptionally active 16, chloroplastic (AHRD V3.3 *** PTA16_ARATH)


Gene families : OG_42_0008396 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008396_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g005710
Cluster HCCA clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
At3g46780 No alias Protein plastid transcriptionally active 16,... 0.06 Orthogroups_2024-Update
Brara.A02435.1 No alias cofactor of plastid-encoded RNA polymerase *(TAC16) 0.11 Orthogroups_2024-Update
Glyma.11G135900 No alias plastid transcriptionally active 16 0.05 Orthogroups_2024-Update
Glyma.12G059600 No alias plastid transcriptionally active 16 0.03 Orthogroups_2024-Update
HORVU3Hr1G065580.5 No alias Unknown function 0.04 Orthogroups_2024-Update
Kfl00302_0070 kfl00302_0070_v1.1 (at3g46780 : 160.0) plastid transcriptionally active 16... 0.06 Orthogroups_2024-Update
MA_806g0020 No alias (at3g46780 : 241.0) plastid transcriptionally active 16... 0.03 Orthogroups_2024-Update
Mp8g16460.1 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.02 Orthogroups_2024-Update
Pp1s230_36V6 No alias pyridine nucleotide binding protein 0.04 Orthogroups_2024-Update
Seita.6G105200.1 No alias cofactor of plastid-encoded RNA polymerase *(TAC16) 0.03 Orthogroups_2024-Update
Sobic.009G091800.2 No alias cofactor of plastid-encoded RNA polymerase *(TAC16) 0.08 Orthogroups_2024-Update
Sobic.009G091850.1 No alias Unknown function 0.09 Orthogroups_2024-Update
Sopen06g001690 No alias NADH(P)-binding 0.15 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005102 signaling receptor binding IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
MF GO:0008083 growth factor activity IEP Predicted GO
BP GO:0008283 cell proliferation IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
MF GO:0030545 receptor regulator activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0048018 receptor ligand activity IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 89 297
No external refs found!