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  5. Solyc06g005910

Solyc06g005910


Description : Tubulin beta chain (AHRD V3.3 *** M1BVE7_SOLTU)


Gene families : OG_42_0000212 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g005910
Cluster HCCA clusters: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
At1g75780 No alias Tubulin beta-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P12411] 0.03 Orthogroups_2024-Update
Brara.F03751.1 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer 0.02 Orthogroups_2024-Update
Glyma.19G127700 No alias beta-6 tubulin 0.03 Orthogroups_2024-Update
LOC_Os03g45920 No alias tubulin/FtsZ domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_72744g0010 No alias (q40665|tbb3_orysa : 805.0) Tubulin beta-3 chain (Beta-3... 0.03 Orthogroups_2024-Update
Pp1s35_125V6 No alias beta chain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR009489 PAR1 454 598
IPR003008 Tubulin_FtsZ_GTPase 3 211
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 261 381
No external refs found!