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  5. Solyc06g007670

Solyc06g007670


Description : 60S ribosomal protein L5 (AHRD V3.3 *** RL5_CUCSA)


Gene families : OG_42_0001609 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001609_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g007670
Cluster HCCA clusters: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
144921 No alias ribosomal protein L5 0.03 Orthogroups_2024-Update
A4A49_19400 No alias 60s ribosomal protein l5 0.18 Orthogroups_2024-Update
Bradi1g13630 No alias ribosomal protein L5 B 0.11 Orthogroups_2024-Update
Bradi4g13640 No alias ribosomal protein L5 0.21 Orthogroups_2024-Update
Bradi5g09500 No alias ribosomal protein L5 B 0.06 Orthogroups_2024-Update
Brara.C04001.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.39 Orthogroups_2024-Update
Brara.C04002.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.32 Orthogroups_2024-Update
Brara.F03014.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.2 Orthogroups_2024-Update
Brara.G00424.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.3 Orthogroups_2024-Update
Cre14.g621450 No alias ribosomal protein L5 B 0.11 Orthogroups_2024-Update
GRMZM5G815894 No alias ribosomal protein L5 0.04 Orthogroups_2024-Update
Glyma.07G059900 No alias ribosomal protein L5 B 0.09 Orthogroups_2024-Update
Glyma.07G060000 No alias ribosomal protein L5 B 0.09 Orthogroups_2024-Update
Glyma.13G280200 No alias ribosomal protein L5 B 0.04 Orthogroups_2024-Update
Glyma.13G280300 No alias ribosomal protein L5 B 0.09 Orthogroups_2024-Update
Glyma.16G028800 No alias ribosomal protein L5 B 0.09 Orthogroups_2024-Update
HORVU2Hr1G073320.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
HORVU5Hr1G092630.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.19 Orthogroups_2024-Update
LOC_Os01g67134 No alias ribosomal L18p/L5e family protein, putative, expressed 0.05 Orthogroups_2024-Update
MA_70965g0010 No alias (q6unt2|rl5_cucsa : 417.0) 60S ribosomal protein L5 -... 0.07 Orthogroups_2024-Update
Mp4g15800.1 No alias component RPL5 of LSU proteome component 0.1 Orthogroups_2024-Update
Potri.013G128600 No alias ribosomal protein L5 B 0.03 Orthogroups_2024-Update
Potri.014G174000 No alias ribosomal protein L5 B 0.13 Orthogroups_2024-Update
Potri.019G099000 No alias ribosomal protein L5 B 0.12 Orthogroups_2024-Update
Pp1s364_3V6 No alias ribosomal protein 0.17 Orthogroups_2024-Update
Pp1s38_329V6 No alias ribosomal protein 0.15 Orthogroups_2024-Update
Pp1s97_115V6 No alias ribosomal protein 0.16 Orthogroups_2024-Update
Seita.5G413500.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Sobic.001G517600.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.003G387900.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.31 Orthogroups_2024-Update
Solyc09g020130 No alias 60S ribosomal protein L5 (AHRD V3.3 *** RL5_CUCSA) 0.05 Orthogroups_2024-Update
Sopen06g034230 No alias Ribosomal L18p/L5e family 0.16 Orthogroups_2024-Update
evm.model.contig_3443.5 No alias (q6unt2|rl5_cucsa : 302.0) 60S ribosomal protein L5 -... 0.32 Orthogroups_2024-Update
evm.model.tig00000194.49 No alias (o65353|rl5_helan : 322.0) 60S ribosomal protein L5 -... 0.16 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
MF GO:0008097 5S rRNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
InterPro domains Description Start Stop
IPR025607 Rbsml_L5e/L18P_C 222 311
IPR005485 Rbsml_L5_euk/L18_arc 45 206
No external refs found!