1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g008190

Solyc06g008190


Description : Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9SVN3_RICCO)


Gene families : OG_42_0007266 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007266_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g008190
Cluster HCCA clusters: Cluster_280

Target Alias Description ECC score Gene Family Method Actions
Glyma.05G173932 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Predicted GO
CC GO:0000922 spindle pole IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005815 microtubule organizing center IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0007020 microtubule nucleation IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 388 421
IPR002885 Pentatricopeptide_repeat 284 312
IPR002885 Pentatricopeptide_repeat 81 110
IPR002885 Pentatricopeptide_repeat 12 40
IPR002885 Pentatricopeptide_repeat 218 266
IPR002885 Pentatricopeptide_repeat 112 161
IPR002885 Pentatricopeptide_repeat 427 474
IPR002885 Pentatricopeptide_repeat 323 368
No external refs found!