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  5. Solyc06g009790

Solyc06g009790


Description : Pectin lyase-like superfamily protein (AHRD V3.3 *** A0A061ENJ0_THECC)


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g009790
Cluster HCCA clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Brara.F02946.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Glyma.02G015600 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G041000 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
MA_104339g0010 No alias (at4g23820 : 575.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Pp1s252_60V6 No alias glycoside hydrolase family 28 expressed 0.02 Orthogroups_2024-Update
Sobic.001G026800.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 9 273
No external refs found!