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  5. Solyc06g053640

Solyc06g053640


Description : RING/U-box superfamily protein (AHRD V3.3 *** A0A061EMD3_THECC)


Gene families : OG_42_0002922 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002922_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g053640
Cluster HCCA clusters: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
Brara.J00248.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Glyma.10G187100 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Sopen06g018750 No alias Ring finger domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
CC GO:0005811 lipid droplet IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
CC GO:0012511 monolayer-surrounded lipid storage body IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 115 158
No external refs found!