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  5. Solyc01g067680

Solyc01g067680


Description : Tubby-like F-box protein (AHRD V3.3 *** M1APZ0_SOLTU)


Gene families : OG_42_0000271 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000271_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g067680
Cluster HCCA clusters: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
402012 No alias tubby like protein 5 0.02 Orthogroups_2024-Update
At1g47270 No alias Tubby-like F-box protein 6... 0.03 Orthogroups_2024-Update
At5g18680 No alias Uncharacterized protein At5g18680 (Fragment)... 0.03 Orthogroups_2024-Update
Bradi1g62390 No alias tubby like protein 3 0.02 Orthogroups_2024-Update
Glyma.15G098200 No alias tubby like protein 3 0.03 Orthogroups_2024-Update
HORVU2Hr1G124880.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Potri.008G195200 No alias tubby like protein 3 0.03 Orthogroups_2024-Update
Seita.3G227800.1 No alias TUB-type transcription factor 0.04 Orthogroups_2024-Update
Sopen01g029620 No alias Tub family 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006023 aminoglycan biosynthetic process IEP Predicted GO
BP GO:0006024 glycosaminoglycan biosynthetic process IEP Predicted GO
BP GO:0006029 proteoglycan metabolic process IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0009100 glycoprotein metabolic process IEP Predicted GO
BP GO:0009101 glycoprotein biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0015012 heparan sulfate proteoglycan biosynthetic process IEP Predicted GO
MF GO:0016149 translation release factor activity, codon specific IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
BP GO:0030166 proteoglycan biosynthetic process IEP Predicted GO
BP GO:0030201 heparan sulfate proteoglycan metabolic process IEP Predicted GO
BP GO:0030203 glycosaminoglycan metabolic process IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 34 82
IPR000007 Tubby_C 99 382
No external refs found!