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  5. Solyc06g054460

Solyc06g054460


Description : S-adenosylmethionine decarboxylase proenzyme (AHRD V3.3 *** K4C6D2_SOLLC)


Gene families : OG_42_0008828 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008828_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g054460
Cluster HCCA clusters: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
Brara.C00859.1 No alias S-adenosyl methionine decarboxylase & EC_4.1 carbon-carbon lyase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004014 adenosylmethionine decarboxylase activity IEA InterProScan predictions
BP GO:0006597 spermine biosynthetic process IEA InterProScan predictions
BP GO:0008295 spermidine biosynthetic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
CC GO:0005666 RNA polymerase III complex IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006359 regulation of transcription by RNA polymerase III IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001985 S-AdoMet_decarboxylase 4 332
No external refs found!