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  5. Solyc06g054540

Solyc06g054540


Description : CHY-type/CTCHY-type/RING-type Zinc finger protein (AHRD V3.3 *** AT5G18650.1)


Gene families : OG_42_0001040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g054540
Cluster HCCA clusters: Cluster_250

Target Alias Description ECC score Gene Family Method Actions
At5g22920 No alias E3 ubiquitin-protein ligase RZFP34... 0.02 Orthogroups_2024-Update
Bradi3g27900 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G038130.3 No alias E3 ubiquitin ligase *(CHY) 0.02 Orthogroups_2024-Update
Sopen06g019610 No alias Zinc-ribbon 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR008913 Znf_CHY 18 98
IPR018957 Znf_C3HC4_RING-type 153 195
No external refs found!