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  5. Kfl00003_0530

Kfl00003_0530 (kfl00003_0530_v1.1)


Aliases : kfl00003_0530_v1.1

Description : (at4g32720 : 156.0) Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis.; La protein 1 (La1); FUNCTIONS IN: RNA binding; INVOLVED IN: embryo development, ribosome biogenesis; LOCATED IN: nucleoplasm, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif (InterPro:IPR014886); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G79880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 312.0) & (original description: no original description)


Gene families : OG_42_0002790 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002790_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00003_0530
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Bradi5g14590 No alias La protein 1 0.04 Orthogroups_2024-Update
Brara.H01297.1 No alias nascent RNA chaperone *(LA) 0.03 Orthogroups_2024-Update
Cre17.g724200 No alias RNA recognition motif (RRM)-containing protein 0.03 Orthogroups_2024-Update
GRMZM2G014750 No alias La protein 1 0.02 Orthogroups_2024-Update
Glyma.04G080500 No alias La protein 1 0.03 Orthogroups_2024-Update
Glyma.06G082200 No alias La protein 1 0.05 Orthogroups_2024-Update
HORVU2Hr1G085880.1 No alias nascent RNA chaperone *(LA) 0.02 Orthogroups_2024-Update
Mp1g04820.1 No alias RNA chaperone (LA). rRNA chaperone (IRP2) 0.05 Orthogroups_2024-Update
Potri.006G241800 No alias La protein 1 0.04 Orthogroups_2024-Update
Seita.1G228700.1 No alias nascent RNA chaperone *(LA) 0.03 Orthogroups_2024-Update
Seita.7G153300.1 No alias nascent RNA chaperone *(LA) 0.04 Orthogroups_2024-Update
Sobic.004G211100.1 No alias nascent RNA chaperone *(LA) 0.03 Orthogroups_2024-Update
Sobic.006G135000.1 No alias nascent RNA chaperone *(LA) 0.07 Orthogroups_2024-Update
Sopen08g022160 No alias RNA binding motif 0.03 Orthogroups_2024-Update
evm.model.contig_2294.3 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR006630 La_HTH 12 78
IPR014886 La_RRM 277 368
IPR000504 RRM_dom 118 169
No external refs found!