1. Home
  2. Species
  3. Klebsormidium nitens
  4. Sequence
  5. Kfl00010_0280

Kfl00010_0280 (kfl00010_0280_v1.1)


Aliases : kfl00010_0280_v1.1

Description : (at3g06010 : 961.0) Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.; ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to water deprivation, response to salt stress, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT5G19310.1); Has 23556 Blast hits to 19403 proteins in 2220 species: Archae - 141; Bacteria - 6122; Metazoa - 5759; Fungi - 4503; Plants - 1859; Viruses - 268; Other Eukaryotes - 4904 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 486.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1922.0) & (original description: no original description)


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00010_0280
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
102849 No alias Homeotic gene regulator 0.02 Orthogroups_2024-Update
440815 No alias chromatin remodeling 5 0.02 Orthogroups_2024-Update
At2g25170 No alias chromatin remodeling factor CHD3 (PICKLE)... 0.02 Orthogroups_2024-Update
At5g66750 No alias ATP-dependent DNA helicase DDM1... 0.02 Orthogroups_2024-Update
Bradi1g44177 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
Bradi1g47367 No alias chromatin remodeling factor CHD3 (PICKLE) 0.01 Orthogroups_2024-Update
Cre09.g390000 No alias chromatin remodeling factor17 0.01 Orthogroups_2024-Update
GRMZM2G010342 No alias chromatin remodeling 5 0.02 Orthogroups_2024-Update
GRMZM2G316191 No alias chromatin remodeling 4 0.02 Orthogroups_2024-Update
GRMZM2G467799 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Glyma.05G131500 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
Glyma.06G063400 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
Glyma.10G250500 No alias Homeotic gene regulator 0.02 Orthogroups_2024-Update
Glyma.11G004100 No alias Homeotic gene regulator 0.02 Orthogroups_2024-Update
Glyma.13G215900 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
Glyma.15G097000 No alias chromatin remodeling factor17 0.03 Orthogroups_2024-Update
Glyma.17G022300 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
LOC_Os03g01200 No alias SNF2 family N-terminal domain containing protein, expressed 0.01 Orthogroups_2024-Update
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Orthogroups_2024-Update
Mp8g17660.1 No alias chromatin remodeling factor (Snf2) 0.02 Orthogroups_2024-Update
PSME_00001593-RA No alias (at2g13370 : 1311.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update
Seita.2G320900.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.02 Orthogroups_2024-Update
Seita.5G166800.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 Orthogroups_2024-Update
Sobic.003G163200.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 Orthogroups_2024-Update
Sobic.010G065300.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.01 Orthogroups_2024-Update
Solyc06g054560 No alias RNA helicase DEAH-box19 0.01 Orthogroups_2024-Update
Sopen01g029280 No alias SNF2 family N-terminal domain 0.03 Orthogroups_2024-Update
Sopen02g017710 No alias SNF2 family N-terminal domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
MF GO:0042393 histone binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006471 protein ADP-ribosylation IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 832 945
IPR029295 SnAC 1025 1101
IPR000330 SNF2_N 533 811
No external refs found!