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  5. Kfl00015_0180

Kfl00015_0180 (kfl00015_0180_v1.1)


Aliases : kfl00015_0180_v1.1

Description : (at5g13680 : 338.0) A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1ñELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate.; ABA-OVERLY SENSITIVE 1 (ABO1); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), IKI3 (InterPro:IPR006849); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p31843|rrpo_oenbe : 146.0) RNA-directed DNA polymerase homolog (Reverse transcriptase homolog) - Oenothera bertiana (Bertero's evening primrose) & (reliability: 676.0) & (original description: no original description)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00015_0180
Cluster HCCA clusters: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
Cre10.g446600 No alias methyl-CPG-binding domain 9 0.04 Orthogroups_2024-Update
LOC_Os01g23330 No alias retrotransposon, putative, centromere-specific, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g53550 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g22110 No alias retrotransposon protein, putative, unclassified, expressed 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0002098 tRNA wobble uridine modification IEA InterProScan predictions
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
BP GO:0015074 DNA integration IEA InterProScan predictions
CC GO:0033588 Elongator holoenzyme complex IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
CC GO:0005886 plasma membrane IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 2757 2866
IPR006849 Elp1 1 960
IPR001878 Znf_CCHC 1537 1553
IPR000477 RT_dom 2132 2289
No external refs found!