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  5. Kfl00023_0480

Kfl00023_0480 (kfl00023_0480_v1.1)


Aliases : kfl00023_0480_v1.1

Description : (p23444|h1_maize : 87.4) Histone H1 - Zea mays (Maize) & (at1g06760 : 81.6) winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT2G30620.1); Has 20265 Blast hits to 10904 proteins in 1494 species: Archae - 37; Bacteria - 8386; Metazoa - 4718; Fungi - 1128; Plants - 980; Viruses - 120; Other Eukaryotes - 4896 (source: NCBI BLink). & (reliability: 163.2) & (original description: no original description)


Gene families : OG_42_0000689 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000689_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00023_0480
Cluster HCCA clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
A4A49_02893 No alias histone h1 0.02 Orthogroups_2024-Update
GRMZM2G080274 No alias histone H1-3 0.02 Orthogroups_2024-Update
GRMZM2G121221 No alias winged-helix DNA-binding transcription factor family protein 0.02 Orthogroups_2024-Update
LOC_Os04g18090 No alias histone H1, putative, expressed 0.01 Orthogroups_2024-Update
PSME_00055126-RA No alias (original description: no original description) 0.03 Orthogroups_2024-Update
Potri.002G043100 No alias winged-helix DNA-binding transcription factor family protein 0.02 Orthogroups_2024-Update
Potri.005G219800 No alias winged-helix DNA-binding transcription factor family protein 0.02 Orthogroups_2024-Update
Sopen09g032300 No alias linker histone H1 and H5 family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006334 nucleosome assembly IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004097 catechol oxidase activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 30 97
No external refs found!