Aliases : kfl00024_0525_v1.1
Description : (at1g33980 : 149.0) Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD); UPF3; FUNCTIONS IN: nucleotide binding; INVOLVED IN: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Regulator of nonsense-mediated decay, UPF3 (InterPro:IPR005120); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 298.0) & (original description: no original description)
Gene families : OG_42_0004004 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004004_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Klebsormidium release: Kfl00024_0525 | |
Cluster | HCCA clusters: Cluster_29 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
GRMZM2G380361 | No alias | Smg-4/UPF3 family protein | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Predicted GO |
MF | GO:0003697 | single-stranded DNA binding | IEP | Predicted GO |
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Predicted GO |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0004817 | cysteine-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0005488 | binding | IEP | Predicted GO |
CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
CC | GO:0005777 | peroxisome | IEP | Predicted GO |
CC | GO:0005783 | endoplasmic reticulum | IEP | Predicted GO |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
BP | GO:0006423 | cysteinyl-tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0006996 | organelle organization | IEP | Predicted GO |
BP | GO:0007031 | peroxisome organization | IEP | Predicted GO |
MF | GO:0016859 | cis-trans isomerase activity | IEP | Predicted GO |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
BP | GO:0018193 | peptidyl-amino acid modification | IEP | Predicted GO |
BP | GO:0018208 | peptidyl-proline modification | IEP | Predicted GO |
CC | GO:0042579 | microbody | IEP | Predicted GO |
BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
CC | GO:0043226 | organelle | IEP | Predicted GO |
CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
CC | GO:0044464 | cell part | IEP | Predicted GO |
BP | GO:0048193 | Golgi vesicle transport | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR005120 | UPF3_dom | 5 | 162 |
No external refs found! |