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  5. Kfl00025_0310

Kfl00025_0310 (kfl00025_0310_v1.1)


Aliases : kfl00025_0310_v1.1

Description : (at4g17720 : 176.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G46870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 352.0) & (original description: no original description)


Gene families : OG_42_0000513 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000513_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00025_0310
Cluster HCCA clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G035719 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Glyma.02G019000 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G008120.3 No alias Unknown function 0.02 Orthogroups_2024-Update
PSME_00016200-RA No alias (at5g24740 : 96.3) EXPRESSED IN: 22 plant structures;... 0.03 Orthogroups_2024-Update
PSME_00022115-RA No alias (at1g14340 : 111.0) RNA-binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update
Solyc03g097110 No alias RNA-binding family protein isoform 1 (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
CC GO:0005779 integral component of peroxisomal membrane IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007030 Golgi organization IEP Predicted GO
BP GO:0007031 peroxisome organization IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Predicted GO
CC GO:0031300 intrinsic component of organelle membrane IEP Predicted GO
CC GO:0031301 integral component of organelle membrane IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 69
No external refs found!