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  5. Kfl00027_0540

Kfl00027_0540 (kfl00027_0540_v1.1)


Aliases : kfl00027_0540_v1.1

Description : (at5g24870 : 106.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G10650.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 212.0) & (original description: no original description)


Gene families : OG_42_0000181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00027_0540
Cluster HCCA clusters: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
Bradi2g34660 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G165044 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G103300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.04G039701 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G041000 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
HORVU2Hr1G113930.2 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU3Hr1G061010.9 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
LOC_Os04g55510 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g48040 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_44267g0010 No alias (at2g15530 : 147.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Seita.5G263300.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
Seita.7G262700.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Seita.7G272600.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.003G250400.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
Sopen10g003040 No alias Ring finger domain 0.04 Orthogroups_2024-Update
Sopen10g022960 No alias Ring finger domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
BP GO:0042126 nitrate metabolic process IEP Predicted GO
BP GO:0042128 nitrate assimilation IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
BP GO:2001057 reactive nitrogen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 949 991
No external refs found!