Aliases : kfl00038_0240_v1.1
Description : (at5g39850 : 306.0) Ribosomal protein S4; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4 (InterPro:IPR001912), Ribosomal protein S4, conserved site (InterPro:IPR018079), Ribosomal protein S4/S9, eukaryotic/archaeal (InterPro:IPR005710), RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (TAIR:AT5G15200.1); Has 6814 Blast hits to 6810 proteins in 3349 species: Archae - 264; Bacteria - 730; Metazoa - 422; Fungi - 285; Plants - 4172; Viruses - 0; Other Eukaryotes - 941 (source: NCBI BLink). & (p49214|rs9_tobac : 102.0) 40S ribosomal protein S9 (S4) (Fragment) - Nicotiana tabacum (Common tobacco) & (reliability: 612.0) & (original description: no original description)
Gene families : OG_42_0001595 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001595_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Klebsormidium release: Kfl00038_0240 | |
Cluster | HCCA clusters: Cluster_24 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
157263 | No alias | Ribosomal protein S4 | 0.08 | Orthogroups_2024-Update | |
74302 | No alias | Ribosomal protein S4 | 0.06 | Orthogroups_2024-Update | |
A4A49_39942 | No alias | 40s ribosomal protein s9-2 | 0.13 | Orthogroups_2024-Update | |
A4A49_60535 | No alias | 40s ribosomal protein s9-2 | 0.06 | Orthogroups_2024-Update | |
Bradi1g20580 | No alias | Ribosomal protein S4 | 0.11 | Orthogroups_2024-Update | |
Bradi1g61090 | No alias | Ribosomal protein S4 | 0.04 | Orthogroups_2024-Update | |
Bradi4g07120 | No alias | Ribosomal protein S4 | 0.08 | Orthogroups_2024-Update | |
Bradi4g14160 | No alias | Ribosomal protein S4 | 0.09 | Orthogroups_2024-Update | |
Brara.B00594.1 | No alias | component *(uS4) of small ribosomal-subunit (SSU) proteome | 0.14 | Orthogroups_2024-Update | |
Brara.C00655.1 | No alias | component *(uS4) of small ribosomal-subunit (SSU) proteome | 0.12 | Orthogroups_2024-Update | |
Brara.J01972.1 | No alias | component *(uS4) of small ribosomal-subunit (SSU) proteome | 0.12 | Orthogroups_2024-Update | |
Cre08.g359750 | No alias | Ribosomal protein S4 | 0.14 | Orthogroups_2024-Update | |
GRMZM2G108348 | No alias | Ribosomal protein S4 | 0.06 | Orthogroups_2024-Update | |
Glyma.04G171400 | No alias | Ribosomal protein S4 | 0.16 | Orthogroups_2024-Update | |
Glyma.05G028000 | No alias | Ribosomal protein S4 | 0.12 | Orthogroups_2024-Update | |
Glyma.06G192500 | No alias | Ribosomal protein S4 | 0.05 | Orthogroups_2024-Update | |
Glyma.17G098600 | No alias | Ribosomal protein S4 | 0.08 | Orthogroups_2024-Update | |
HORVU2Hr1G028510.1 | No alias | component *(uS4) of small ribosomal-subunit (SSU) proteome | 0.1 | Orthogroups_2024-Update | |
HORVU5Hr1G038920.1 | No alias | component *(uS4) of small ribosomal-subunit (SSU) proteome | 0.09 | Orthogroups_2024-Update | |
MA_10429805g0030 | No alias | (at5g39850 : 342.0) Ribosomal protein S4; FUNCTIONS IN:... | 0.07 | Orthogroups_2024-Update | |
Mp3g00520.1 | No alias | component RPS9 of SSU proteome | 0.08 | Orthogroups_2024-Update | |
Potri.007G056100 | No alias | Ribosomal protein S4 | 0.09 | Orthogroups_2024-Update | |
Potri.016G076800 | No alias | Ribosomal protein S4 | 0.02 | Orthogroups_2024-Update | |
Pp1s13_410V6 | No alias | 40s ribosomal protein s9 | 0.13 | Orthogroups_2024-Update | |
Pp1s14_31V6 | No alias | 40s ribosomal protein s9 | 0.05 | Orthogroups_2024-Update | |
Pp1s223_95V6 | No alias | 40s ribosomal protein s9 | 0.2 | Orthogroups_2024-Update | |
Seita.2G400200.1 | No alias | component *(uS4) of small ribosomal-subunit (SSU) proteome | 0.06 | Orthogroups_2024-Update | |
Seita.3G361100.1 | No alias | component *(uS4) of small ribosomal-subunit (SSU) proteome | 0.08 | Orthogroups_2024-Update | |
Seita.9G384200.1 | No alias | component *(uS4) of small ribosomal-subunit (SSU) proteome | 0.07 | Orthogroups_2024-Update | |
Sobic.002G384700.2 | No alias | component *(uS4) of small ribosomal-subunit (SSU) proteome | 0.13 | Orthogroups_2024-Update | |
Sobic.002G385100.1 | No alias | component *(uS4) of small ribosomal-subunit (SSU) proteome | 0.09 | Orthogroups_2024-Update | |
Sobic.008G100000.1 | No alias | component *(uS4) of small ribosomal-subunit (SSU) proteome | 0.17 | Orthogroups_2024-Update | |
Solyc01g010540 | No alias | 40S ribosomal protein S9, putative (AHRD V3.3 *** Q60CZ2_SOLDE) | 0.13 | Orthogroups_2024-Update | |
Solyc01g010580 | No alias | 40S ribosomal protein S9, putative (AHRD V3.3 *** Q60CZ2_SOLDE) | 0.13 | Orthogroups_2024-Update | |
Solyc04g005680 | No alias | Ribosomal protein (AHRD V3.3 *** B3TM27_ELAGV) | 0.03 | Orthogroups_2024-Update | |
Solyc05g007250 | No alias | 40S ribosomal protein S9, putative (AHRD V3.3 *** Q60CZ2_SOLDE) | 0.1 | Orthogroups_2024-Update | |
Sopen01g006190 | No alias | Ribosomal protein S4/S9 N-terminal domain | 0.06 | Orthogroups_2024-Update | |
Sopen01g006230 | No alias | Ribosomal protein S4/S9 N-terminal domain | 0.15 | Orthogroups_2024-Update | |
Sopen04g001730 | No alias | Ribosomal protein S4/S9 N-terminal domain | 0.13 | Orthogroups_2024-Update | |
Sopen05g003210 | No alias | Ribosomal protein S4/S9 N-terminal domain | 0.1 | Orthogroups_2024-Update | |
evm.model.contig_2502.7 | No alias | (at5g15200 : 244.0) Ribosomal protein S4; FUNCTIONS IN:... | 0.18 | Orthogroups_2024-Update | |
evm.model.tig00000826.24 | No alias | (at5g15200 : 271.0) Ribosomal protein S4; FUNCTIONS IN:... | 0.14 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | InterProScan predictions |
CC | GO:0005622 | intracellular | IEA | InterProScan predictions |
MF | GO:0019843 | rRNA binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0003333 | amino acid transmembrane transport | IEP | Predicted GO |
MF | GO:0003688 | DNA replication origin binding | IEP | Predicted GO |
MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
MF | GO:0004112 | cyclic-nucleotide phosphodiesterase activity | IEP | Predicted GO |
MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
CC | GO:0005840 | ribosome | IEP | Predicted GO |
BP | GO:0006260 | DNA replication | IEP | Predicted GO |
BP | GO:0006412 | translation | IEP | Predicted GO |
BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0006865 | amino acid transport | IEP | Predicted GO |
BP | GO:0008150 | biological_process | IEP | Predicted GO |
BP | GO:0008152 | metabolic process | IEP | Predicted GO |
BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0009987 | cellular process | IEP | Predicted GO |
BP | GO:0015711 | organic anion transport | IEP | Predicted GO |
BP | GO:0015849 | organic acid transport | IEP | Predicted GO |
CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
CC | GO:0043226 | organelle | IEP | Predicted GO |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
MF | GO:0043565 | sequence-specific DNA binding | IEP | Predicted GO |
BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
BP | GO:0046942 | carboxylic acid transport | IEP | Predicted GO |
BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
BP | GO:0098656 | anion transmembrane transport | IEP | Predicted GO |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
BP | GO:1903825 | organic acid transmembrane transport | IEP | Predicted GO |
BP | GO:1905039 | carboxylic acid transmembrane transport | IEP | Predicted GO |
MF | GO:1990837 | sequence-specific double-stranded DNA binding | IEP | Predicted GO |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No external refs found! |