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  5. Kfl00039_0160

Kfl00039_0160 (kfl00039_0160_v1.1)


Aliases : kfl00039_0160_v1.1

Description : (p50888|rl24_horvu : 181.0) 60S ribosomal protein L24 - Hordeum vulgare (Barley) & (at3g53020 : 176.0) RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in apical-basal gynoecium patterning similar to previously described ett and mp mutants. Transformation of stv1-1 mutant with a uORF-eliminated ETT construct partially suppressed the stv1 gynoecium phenotype, implying that STV1 could influence ETT translation through its uORFs. Regulated by TCP20.; SHORT VALVE1 (STV1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: auxin mediated signaling pathway, gynoecium development, translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L24e (InterPro:IPR000988); BEST Arabidopsis thaliana protein match is: ribosomal protein L24 (TAIR:AT2G36620.1); Has 1463 Blast hits to 1456 proteins in 346 species: Archae - 110; Bacteria - 20; Metazoa - 460; Fungi - 300; Plants - 340; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink). & (reliability: 352.0) & (original description: no original description)


Gene families : OG_42_0002119 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00039_0160
Cluster HCCA clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
438784 No alias Ribosomal protein L24e family protein 0.04 Orthogroups_2024-Update
A4A49_57589 No alias 60s ribosomal protein l24 0.06 Orthogroups_2024-Update
At2g36620 No alias 60S ribosomal protein L24-1... 0.02 Orthogroups_2024-Update
Bradi2g53220 No alias ribosomal protein L24 0.02 Orthogroups_2024-Update
Bradi3g38917 No alias ribosomal protein L24 0.03 Orthogroups_2024-Update
Brara.D00556.1 No alias component *(eL24) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Brara.E00829.1 No alias component *(eL24) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Brara.G01568.1 No alias component *(eL24) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.I03601.1 No alias component *(eL24) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Cre09.g391097 No alias Ribosomal protein L24e family protein 0.09 Orthogroups_2024-Update
Glyma.03G189300 No alias ribosomal protein L24 0.11 Orthogroups_2024-Update
Glyma.10G066500 No alias ribosomal protein L24 0.11 Orthogroups_2024-Update
Glyma.13G151600 No alias ribosomal protein L24 0.06 Orthogroups_2024-Update
Glyma.19G189600 No alias ribosomal protein L24 0.09 Orthogroups_2024-Update
HORVU3Hr1G080130.4 No alias component *(eL24) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
LOC_Os05g40820 No alias ribosomal protein L24, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00007704-RA No alias (p50888|rl24_horvu : 205.0) 60S ribosomal protein L24 -... 0.03 Orthogroups_2024-Update
Potri.003G123101 No alias ribosomal protein L24 0.08 Orthogroups_2024-Update
Pp1s5_366V6 No alias 60s ribosomal protein l24 0.07 Orthogroups_2024-Update
Pp1s60_272V6 No alias 60s ribosomal protein l24 0.03 Orthogroups_2024-Update
Pp1s63_123V6 No alias 60s ribosomal protein l24 0.05 Orthogroups_2024-Update
Pp1s74_148V6 No alias 60s ribosomal protein l24 0.08 Orthogroups_2024-Update
Seita.2G084800.1 No alias component *(eL24) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Seita.3G199800.1 No alias component *(eL24) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Seita.5G358600.1 No alias component *(eL24) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Sobic.001G175300.1 No alias component *(eL24) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Sobic.009G177700.1 No alias component *(eL24) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Solyc09g008800 No alias 60S ribosomal protein L24 (AHRD V3.3 *** RL24_PRUAV) 0.12 Orthogroups_2024-Update
Solyc10g083740 No alias 60S ribosomal protein L24 (AHRD V3.3 *** RL24_PRUAV) 0.17 Orthogroups_2024-Update
Solyc10g085480 No alias 60S ribosomal protein L24 (AHRD V3.3 *** RL24_PRUAV) 0.03 Orthogroups_2024-Update
Sopen09g003590 No alias Ribosomal protein L24e 0.13 Orthogroups_2024-Update
Sopen10g033210 No alias Exostosin family 0.11 Orthogroups_2024-Update
Sopen10g034910 No alias Ribosomal protein L24e 0.05 Orthogroups_2024-Update
evm.model.contig_2706.7 No alias (at3g53020 : 122.0) RPL24B encodes ribosomal protein... 0.15 Orthogroups_2024-Update
evm.model.tig00001093.9 No alias no hits & (original description: no original description) 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004555 alpha,alpha-trehalase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015927 trehalase activity IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000988 Ribosomal_L24e-rel 4 67
No external refs found!