1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g063110

Solyc06g063110


Description : RING/U-box superfamily protein (AHRD V3.3 *** AT1G72310.1)


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g063110
Cluster HCCA clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
A4A49_16075 No alias ring-h2 finger protein atl67 0.03 Orthogroups_2024-Update
A4A49_18662 No alias ring-h2 finger protein atl8 0.02 Orthogroups_2024-Update
A4A49_42691 No alias ring-h2 finger protein atl7 0.02 Orthogroups_2024-Update
Bradi3g52160 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g11880 No alias RING/U-box superfamily protein 0.06 Orthogroups_2024-Update
Brara.E02690.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.11G172300 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Glyma.13G170300 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
HORVU5Hr1G096480.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G042940.1 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os02g35329 No alias RING-H2 finger protein ATL3F, putative, expressed 0.02 Orthogroups_2024-Update
MA_10436208g0010 No alias (at1g72200 : 100.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_12352g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_6934973g0010 No alias (at5g01880 : 125.0) RING/U-box superfamily protein;... 0.05 Orthogroups_2024-Update
MA_904294g0010 No alias (at1g72310 : 107.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
Potri.010G206300 No alias TOXICOS EN LEVADURA 2 0.03 Orthogroups_2024-Update
Pp1s20_276V6 No alias No description available 0.03 Orthogroups_2024-Update
Seita.1G005000.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.1G306500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.2G302400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Seita.3G209600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.3G227200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.4G120300.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Seita.5G023000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G057000.2 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G251100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen04g006320 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen12g029870 No alias Ring finger domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009539 photosystem II reaction center IEP Predicted GO
BP GO:0010109 regulation of photosynthesis IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predicted GO
BP GO:0042549 photosystem II stabilization IEP Predicted GO
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 113 156
No external refs found!