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- Kfl00043_0260
Kfl00043_0260 (kfl00043_0260_v1.1)
Aliases : kfl00043_0260_v1.1
Description : (at1g79950 : 709.0) RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of transcription, DNA-dependent, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), DEAD-like helicase, N-terminal (InterPro:IPR014001), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1); Has 3149 Blast hits to 2661 proteins in 831 species: Archae - 223; Bacteria - 987; Metazoa - 718; Fungi - 431; Plants - 207; Viruses - 6; Other Eukaryotes - 577 (source: NCBI BLink). & (reliability: 1418.0) & (original description: no original description)
Expression Profile
Attention: This gene has low abundance.
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
| Type | Description | Actions |
| Neighborhood | Klebsormidium release: Kfl00043_0260 | |
| Cluster | HCCA clusters: Cluster_101 | |
Expression Context Conservation (ECC)
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
| At1g79950 | No alias | Regulator of telomere elongation helicase 1 homolog... | 0.02 | Orthogroups_2024-Update | |
| Solyc10g079510 | No alias | RAD3-like DNA-binding helicase protein (AHRD V3.3 ***... | 0.02 | Orthogroups_2024-Update | |
| Sopen03g039070 | No alias | Helicase C-terminal domain | 0.02 | Orthogroups_2024-Update | |
Functional Annotation
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0000166 | nucleotide binding | None | Extended |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003676 | nucleic acid binding | IEA | InterProScan predictions |
| MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
| MF | GO:0003678 | DNA helicase activity | None | Extended |
| MF | GO:0003824 | catalytic activity | None | Extended |
| MF | GO:0004003 | ATP-dependent DNA helicase activity | IEA | InterProScan predictions |
| MF | GO:0004386 | helicase activity | None | Extended |
| MF | GO:0005488 | binding | None | Extended |
| MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEA | InterProScan predictions |
| BP | GO:0006725 | cellular aromatic compound metabolic process | None | Extended |
| BP | GO:0006807 | nitrogen compound metabolic process | None | Extended |
| MF | GO:0008026 | ATP-dependent helicase activity | IEA | InterProScan predictions |
| MF | GO:0008094 | DNA-dependent ATPase activity | None | Extended |
| MF | GO:0008144 | drug binding | None | Extended |
| BP | GO:0008150 | biological_process | None | Extended |
| BP | GO:0008152 | metabolic process | None | Extended |
| BP | GO:0009987 | cellular process | None | Extended |
| MF | GO:0016462 | pyrophosphatase activity | None | Extended |
| MF | GO:0016787 | hydrolase activity | None | Extended |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | None | Extended |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEA | InterProScan predictions |
| MF | GO:0016887 | ATPase activity | None | Extended |
| MF | GO:0017076 | purine nucleotide binding | None | Extended |
| MF | GO:0017111 | nucleoside-triphosphatase activity | None | Extended |
| MF | GO:0030554 | adenyl nucleotide binding | None | Extended |
| MF | GO:0032553 | ribonucleotide binding | None | Extended |
| MF | GO:0032555 | purine ribonucleotide binding | None | Extended |
| MF | GO:0032559 | adenyl ribonucleotide binding | None | Extended |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | None | Extended |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | None | Extended |
| MF | GO:0036094 | small molecule binding | None | Extended |
| MF | GO:0042623 | ATPase activity, coupled | None | Extended |
| MF | GO:0043167 | ion binding | None | Extended |
| MF | GO:0043168 | anion binding | None | Extended |
| BP | GO:0044237 | cellular metabolic process | None | Extended |
| BP | GO:0044238 | primary metabolic process | None | Extended |
| BP | GO:0046483 | heterocycle metabolic process | None | Extended |
| MF | GO:0070035 | purine NTP-dependent helicase activity | None | Extended |
| BP | GO:0071704 | organic substance metabolic process | None | Extended |
| MF | GO:0097159 | organic cyclic compound binding | None | Extended |
| MF | GO:0097367 | carbohydrate derivative binding | None | Extended |
| MF | GO:0140097 | catalytic activity, acting on DNA | None | Extended |
| MF | GO:1901265 | nucleoside phosphate binding | None | Extended |
| BP | GO:1901360 | organic cyclic compound metabolic process | None | Extended |
| MF | GO:1901363 | heterocyclic compound binding | None | Extended |
| Type | GO Term | Name | Evidence | Source |
| CC | GO:0005694 | chromosome | IEP | Predicted GO |
| BP | GO:0032259 | methylation | IEP | Predicted GO |
| CC | GO:0070531 | BRCA1-A complex | IEP | Predicted GO |
| CC | GO:0070552 | BRISC complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
| IPR006555 | ATP-dep_Helicase_C | 548 | 742 |
| IPR010614 | DEAD_2 | 122 | 282 |
