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Kfl00054_0210 (kfl00054_0210_v1.1)


Aliases : kfl00054_0210_v1.1

Description : (at3g23700 : 265.0) Nucleic acid-binding proteins superfamily; FUNCTIONS IN: RNA binding; INVOLVED IN: response to cold; LOCATED IN: chloroplast stroma, nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: ribosomal protein S1 (TAIR:AT5G30510.1); Has 30347 Blast hits to 20342 proteins in 2814 species: Archae - 227; Bacteria - 22388; Metazoa - 193; Fungi - 227; Plants - 347; Viruses - 0; Other Eukaryotes - 6965 (source: NCBI BLink). & (p29344|rr1_spiol : 101.0) 30S ribosomal protein S1, chloroplast precursor (CS1) - Spinacia oleracea (Spinach) & (reliability: 530.0) & (original description: no original description)


Gene families : OG_42_0008367 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008367_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00054_0210
Cluster HCCA clusters: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
A4A49_09840 No alias 30s ribosomal protein s1, chloroplastic 0.03 Orthogroups_2024-Update
Potri.014G148500 No alias Nucleic acid-binding proteins superfamily 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
BP GO:0006091 generation of precursor metabolites and energy IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003029 S1_domain 207 283
IPR003029 S1_domain 121 193
No external refs found!