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  5. Kfl00055_0100

Kfl00055_0100 (kfl00055_0100_v1.1)


Aliases : kfl00055_0100_v1.1

Description : (at5g42190 : 233.0) Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis.; E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: S phase kinase-associated protein 1 (TAIR:AT1G75950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 466.0) & (original description: no original description)


Gene families : OG_42_0000356 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000356_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00055_0100
Cluster HCCA clusters: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
A4A49_32726 No alias skp1-like protein 1a 0.02 Orthogroups_2024-Update
At5g42190 No alias SKP1-like protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW7] 0.02 Orthogroups_2024-Update
GRMZM2G060394 No alias SKP1-like 4 0.02 Orthogroups_2024-Update
Glyma.11G079600 No alias S phase kinase-associated protein 1 0.02 Orthogroups_2024-Update
MA_82940g0020 No alias (at5g42190 : 196.0) Similar to SKP1 in yeast and humans... 0.02 Orthogroups_2024-Update
PSME_00014843-RA No alias (at5g42190 : 218.0) Similar to SKP1 in yeast and humans... 0.03 Orthogroups_2024-Update
Potri.002G018700 No alias E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein 0.03 Orthogroups_2024-Update
Potri.005G109900 No alias E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0030677 ribonuclease P complex IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR016072 Skp1_comp_dimer 112 159
IPR016073 Skp1_comp_POZ 9 67
No external refs found!