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  5. Kfl00055_0280

Kfl00055_0280 (kfl00055_0280_v1.1)


Aliases : kfl00055_0280_v1.1

Description : (at5g24740 : 506.0) EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1). & (reliability: 1012.0) & (original description: no original description)


Gene families : OG_42_0003726 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003726_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00055_0280
Cluster HCCA clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
439148 No alias Protein of unknown function (DUF1162) 0.1 Orthogroups_2024-Update
At5g24740 No alias Protein of unknown function (DUF1162) [Source:TAIR;Acc:AT5G24740] 0.02 Orthogroups_2024-Update
Bradi3g13757 No alias Protein of unknown function (DUF1162) 0.06 Orthogroups_2024-Update
Cre17.g727600 No alias Protein of unknown function (DUF1162) 0.02 Orthogroups_2024-Update
HORVU7Hr1G075370.8 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os08g02350 No alias expressed protein 0.01 Orthogroups_2024-Update
Potri.001G455600 No alias Protein of unknown function (DUF1162) 0.02 Orthogroups_2024-Update
Pp1s253_31V6 No alias vacuolar protein sorting-associated protein vps13 0.01 Orthogroups_2024-Update
Seita.6G085500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc11g045170 No alias No description available 0.01 Orthogroups_2024-Update
evm.model.tig00000459.51 No alias (at5g24740 : 80.9) EXPRESSED IN: 22 plant structures;... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0000175 3'-5'-exoribonuclease activity IEP Predicted GO
BP GO:0000726 non-recombinational repair IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004532 exoribonuclease activity IEP Predicted GO
MF GO:0004535 poly(A)-specific ribonuclease activity IEP Predicted GO
MF GO:0004677 DNA-dependent protein kinase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
CC GO:0030014 CCR4-NOT complex IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0032947 protein-containing complex scaffold activity IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR031642 VPS13_mid_rpt 627 905
IPR009543 SHR-BD 3190 3245
IPR009543 SHR-BD 3026 3167
IPR031646 VPS13_N2 135 376
IPR031645 VPS13_C 3580 3758
IPR026854 VPS13_N 2 115
No external refs found!