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Aliases : kfl00059_0120_v1.1
Description : (at1g29320 : 214.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 10050 Blast hits to 5411 proteins in 439 species: Archae - 25; Bacteria - 1235; Metazoa - 2837; Fungi - 1519; Plants - 647; Viruses - 46; Other Eukaryotes - 3741 (source: NCBI BLink). & (reliability: 428.0) & (original description: no original description)
Gene families : OG_42_0006610 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006610_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Klebsormidium release: Kfl00059_0120 | |
| Cluster | HCCA clusters: Cluster_13 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi1g26700 | No alias | Transducin/WD40 repeat-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
| Brara.H01953.1 | No alias | pre-60S ribosomal subunit assembly factor *(NSA1) | 0.02 | Orthogroups_2024-Update | |
| Brara.I02893.1 | No alias | pre-60S ribosomal subunit assembly factor *(NSA1) | 0.03 | Orthogroups_2024-Update | |
| Cre17.g718650 | No alias | Transducin/WD40 repeat-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| GRMZM2G154864 | No alias | Transducin/WD40 repeat-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| HORVU2Hr1G048110.6 | No alias | pre-60S ribosomal subunit assembly factor *(NSA1) | 0.01 | Orthogroups_2024-Update | |
| Seita.2G325600.1 | No alias | pre-60S ribosomal subunit assembly factor *(NSA1) | 0.05 | Orthogroups_2024-Update | |
| Sobic.002G312800.1 | No alias | pre-60S ribosomal subunit assembly factor *(NSA1) | 0.03 | Orthogroups_2024-Update | |
| Solyc08g008160 | No alias | WD-repeat protein (AHRD V3.3 *** E5GBV4_CUCME) | 0.02 | Orthogroups_2024-Update | |
| Sopen08g004010 | No alias | hypothetical protein | 0.02 | Orthogroups_2024-Update | |
| evm.model.tig00020710.40 | No alias | (at1g29320 : 100.0) Transducin/WD40 repeat-like... | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003684 | damaged DNA binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003729 | mRNA binding | IEP | Predicted GO |
| MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
| MF | GO:0003906 | DNA-(apurinic or apyrimidinic site) endonuclease activity | IEP | Predicted GO |
| CC | GO:0005669 | transcription factor TFIID complex | IEP | Predicted GO |
| CC | GO:0005685 | U1 snRNP | IEP | Predicted GO |
| BP | GO:0006281 | DNA repair | IEP | Predicted GO |
| BP | GO:0006284 | base-excision repair | IEP | Predicted GO |
| BP | GO:0006289 | nucleotide-excision repair | IEP | Predicted GO |
| BP | GO:0006367 | transcription initiation from RNA polymerase II promoter | IEP | Predicted GO |
| BP | GO:0006376 | mRNA splice site selection | IEP | Predicted GO |
| BP | GO:0006413 | translational initiation | IEP | Predicted GO |
| BP | GO:0006771 | riboflavin metabolic process | IEP | Predicted GO |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Predicted GO |
| BP | GO:0007186 | G protein-coupled receptor signaling pathway | IEP | Predicted GO |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
| MF | GO:0008686 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | IEP | Predicted GO |
| BP | GO:0009231 | riboflavin biosynthetic process | IEP | Predicted GO |
| MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Predicted GO |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Predicted GO |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Predicted GO |
| BP | GO:0033554 | cellular response to stress | IEP | Predicted GO |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044428 | nuclear part | IEP | Predicted GO |
| CC | GO:0044798 | nuclear transcription factor complex | IEP | Predicted GO |
| BP | GO:0051716 | cellular response to stimulus | IEP | Predicted GO |
| MF | GO:0070569 | uridylyltransferase activity | IEP | Predicted GO |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Predicted GO |
| CC | GO:0090575 | RNA polymerase II transcription factor complex | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | Predicted GO |
| CC | GO:0120114 | Sm-like protein family complex | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |