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  5. Solyc06g065060

Solyc06g065060


Description : FAD-binding Berberine family protein (AHRD V3.3 *** A0A061GF79_THECC)


Gene families : OG_42_0000069 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000069_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g065060
Cluster HCCA clusters: Cluster_196

Target Alias Description ECC score Gene Family Method Actions
A4A49_11752 No alias flavin-dependent oxidoreductase fox5 0.03 Orthogroups_2024-Update
At1g30740 No alias FAD-binding Berberine family protein [Source:TAIR;Acc:AT1G30740] 0.03 Orthogroups_2024-Update
Bradi5g17300 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
Brara.I02779.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Glyma.08G080100 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Glyma.15G134300 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
LOC_Os06g35700 No alias reticuline oxidase-like protein precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g41350 No alias FAD-binding domain-containing protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_162773g0010 No alias (at4g20860 : 377.0) FAD-binding Berberine family... 0.03 Orthogroups_2024-Update
Potri.001G464800 No alias FAD-binding Berberine family protein 0.04 Orthogroups_2024-Update
Seita.4G178100.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.02 Orthogroups_2024-Update
Solyc02g070200 No alias FAD-binding Berberine family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc02g079450 No alias FAD-binding Berberine family protein (AHRD V3.3 *** AT5G44360.2) 0.03 Orthogroups_2024-Update
Sopen02g024250 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
MF GO:0050660 flavin adenine dinucleotide binding IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
BP GO:0042255 ribosome assembly IEP Predicted GO
BP GO:0042256 mature ribosome assembly IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR006094 Oxid_FAD_bind_N 73 209
IPR012951 BBE 470 528
No external refs found!