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- Kfl00071_0090
Kfl00071_0090 (kfl00071_0090_v1.1)
Aliases : kfl00071_0090_v1.1
Description : (at1g48900 : 652.0) Signal recognition particle, SRP54 subunit protein; FUNCTIONS IN: 7S RNA binding, mRNA binding, nucleoside-triphosphatase activity, GTP binding, nucleotide binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit (InterPro:IPR006325), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: signal recognition particle 54 kDa subunit (TAIR:AT1G15310.1); Has 17287 Blast hits to 17282 proteins in 2918 species: Archae - 472; Bacteria - 10591; Metazoa - 363; Fungi - 288; Plants - 279; Viruses - 1; Other Eukaryotes - 5293 (source: NCBI BLink). & (p49968|sr541_horvu : 646.0) Signal recognition particle 54 kDa protein 1 (SRP54) - Hordeum vulgare (Barley) & (reliability: 1304.0) & (original description: no original description)
Expression Profile
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
| Type | Description | Actions |
| Neighborhood | Klebsormidium release: Kfl00071_0090 | |
| Cluster | HCCA clusters: Cluster_100 | |
Expression Context Conservation (ECC)
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
| Cre13.g569200 | No alias | Signal recognition particle, SRP54 subunit protein | 0.01 | Orthogroups_2024-Update | |
| GRMZM2G038953 | No alias | Signal recognition particle, SRP54 subunit protein | 0.02 | Orthogroups_2024-Update | |
Functional Annotation
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0000166 | nucleotide binding | None | Extended |
| MF | GO:0001882 | nucleoside binding | None | Extended |
| MF | GO:0001883 | purine nucleoside binding | None | Extended |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003676 | nucleic acid binding | None | Extended |
| MF | GO:0003723 | RNA binding | None | Extended |
| MF | GO:0005488 | binding | None | Extended |
| MF | GO:0005525 | GTP binding | IEA | InterProScan predictions |
| CC | GO:0005575 | cellular_component | None | Extended |
| BP | GO:0006605 | protein targeting | None | Extended |
| BP | GO:0006612 | protein targeting to membrane | None | Extended |
| BP | GO:0006613 | cotranslational protein targeting to membrane | None | Extended |
| BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEA | InterProScan predictions |
| BP | GO:0006810 | transport | None | Extended |
| BP | GO:0006886 | intracellular protein transport | None | Extended |
| BP | GO:0008104 | protein localization | None | Extended |
| BP | GO:0008150 | biological_process | None | Extended |
| MF | GO:0008312 | 7S RNA binding | IEA | InterProScan predictions |
| BP | GO:0015031 | protein transport | None | Extended |
| BP | GO:0015833 | peptide transport | None | Extended |
| MF | GO:0017076 | purine nucleotide binding | None | Extended |
| MF | GO:0019001 | guanyl nucleotide binding | None | Extended |
| MF | GO:0032549 | ribonucleoside binding | None | Extended |
| MF | GO:0032550 | purine ribonucleoside binding | None | Extended |
| MF | GO:0032553 | ribonucleotide binding | None | Extended |
| MF | GO:0032555 | purine ribonucleotide binding | None | Extended |
| MF | GO:0032561 | guanyl ribonucleotide binding | None | Extended |
| CC | GO:0032991 | protein-containing complex | None | Extended |
| BP | GO:0033036 | macromolecule localization | None | Extended |
| BP | GO:0033365 | protein localization to organelle | None | Extended |
| BP | GO:0034613 | cellular protein localization | None | Extended |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | None | Extended |
| MF | GO:0036094 | small molecule binding | None | Extended |
| BP | GO:0042886 | amide transport | None | Extended |
| MF | GO:0043167 | ion binding | None | Extended |
| MF | GO:0043168 | anion binding | None | Extended |
| CC | GO:0044424 | intracellular part | None | Extended |
| CC | GO:0044444 | cytoplasmic part | None | Extended |
| CC | GO:0044464 | cell part | None | Extended |
| BP | GO:0045047 | protein targeting to ER | None | Extended |
| BP | GO:0045184 | establishment of protein localization | None | Extended |
| BP | GO:0046907 | intracellular transport | None | Extended |
| CC | GO:0048500 | signal recognition particle | IEA | InterProScan predictions |
| BP | GO:0051179 | localization | None | Extended |
| BP | GO:0051234 | establishment of localization | None | Extended |
| BP | GO:0051641 | cellular localization | None | Extended |
| BP | GO:0051649 | establishment of localization in cell | None | Extended |
| BP | GO:0070727 | cellular macromolecule localization | None | Extended |
| BP | GO:0070972 | protein localization to endoplasmic reticulum | None | Extended |
| BP | GO:0071702 | organic substance transport | None | Extended |
| BP | GO:0071705 | nitrogen compound transport | None | Extended |
| BP | GO:0072594 | establishment of protein localization to organelle | None | Extended |
| BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | None | Extended |
| BP | GO:0072657 | protein localization to membrane | None | Extended |
| BP | GO:0090150 | establishment of protein localization to membrane | None | Extended |
| MF | GO:0097159 | organic cyclic compound binding | None | Extended |
| MF | GO:0097367 | carbohydrate derivative binding | None | Extended |
| MF | GO:1901265 | nucleoside phosphate binding | None | Extended |
| MF | GO:1901363 | heterocyclic compound binding | None | Extended |
| CC | GO:1990904 | ribonucleoprotein complex | None | Extended |
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
| MF | GO:0004497 | monooxygenase activity | IEP | Predicted GO |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
| MF | GO:0004813 | alanine-tRNA ligase activity | IEP | Predicted GO |
| BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
| BP | GO:0006413 | translational initiation | IEP | Predicted GO |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
| BP | GO:0006419 | alanyl-tRNA aminoacylation | IEP | Predicted GO |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
| MF | GO:0010277 | chlorophyllide a oxygenase [overall] activity | IEP | Predicted GO |
| MF | GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | IEP | Predicted GO |
| MF | GO:0016703 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) | IEP | Predicted GO |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
| BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | Predicted GO |
| MF | GO:0051537 | 2 iron, 2 sulfur cluster binding | IEP | Predicted GO |
| MF | GO:0051540 | metal cluster binding | IEP | Predicted GO |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
| IPR013822 | Signal_recog_particl_SRP54_hlx | 6 | 82 |
| IPR000897 | SRP54_GTPase_dom | 101 | 296 |
| IPR004125 | Signal_recog_particle_SRP54_M | 348 | 438 |
