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  5. Solyc06g065730

Solyc06g065730


Description : chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 *** AT2G25170.4)


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g065730
Cluster HCCA clusters: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
130534 No alias chromatin remodeling 4 0.02 Orthogroups_2024-Update
440815 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
Bradi1g26940 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
Bradi1g47367 No alias chromatin remodeling factor CHD3 (PICKLE) 0.05 Orthogroups_2024-Update
Bradi2g12950 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
Bradi2g35740 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
Bradi2g36380 No alias Homeotic gene regulator 0.02 Orthogroups_2024-Update
Brara.B00782.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.05G131500 No alias chromatin remodeling 4 0.04 Orthogroups_2024-Update
Glyma.11G004100 No alias Homeotic gene regulator 0.04 Orthogroups_2024-Update
HORVU7Hr1G041450.33 No alias SMARCA component *(SYD/BRM/MINU) 0.02 Orthogroups_2024-Update
Kfl00590_0040 kfl00590_0040_v1.1 (at2g28290 : 922.0) Encodes a SWI2/SNF2-like protein in... 0.02 Orthogroups_2024-Update
LOC_Os03g01200 No alias SNF2 family N-terminal domain containing protein, expressed 0.02 Orthogroups_2024-Update
Mp5g06580.2 No alias chromatin remodeling factor (Snf2) 0.02 Orthogroups_2024-Update
Mp8g17660.1 No alias chromatin remodeling factor (Snf2) 0.03 Orthogroups_2024-Update
PSME_00005765-RA No alias (q7g8y3|isw2_orysa : 1630.0) Probable chromatin... 0.02 Orthogroups_2024-Update
PSME_00009907-RA No alias (at2g25170 : 144.0) Encodes a SWI/SWF nuclear-localized... 0.02 Orthogroups_2024-Update
PSME_00009909-RA No alias (at2g25170 : 296.0) Encodes a SWI/SWF nuclear-localized... 0.02 Orthogroups_2024-Update
PSME_00015826-RA No alias (at3g06010 : 472.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.03 Orthogroups_2024-Update
Pp1s166_101V6 No alias chromodomain helicase dna binding protein 6 0.01 Orthogroups_2024-Update
Pp1s65_183V6 No alias chromatin remodeling complex subunit 0.02 Orthogroups_2024-Update
Seita.3G058900.1 No alias SMARCA component *(SYD/BRM/MINU) 0.02 Orthogroups_2024-Update
Sobic.003G163200.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 Orthogroups_2024-Update
Sobic.010G065300.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.04 Orthogroups_2024-Update
evm.model.tig00000350.9 No alias (at2g25170 : 212.0) Encodes a SWI/SWF nuclear-localized... 0.02 Orthogroups_2024-Update
evm.model.tig00000802.67 No alias (at3g06010 : 465.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.01 Orthogroups_2024-Update
evm.model.tig00000983.26 No alias (at2g13370 : 651.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
MF GO:0032947 protein-containing complex scaffold activity IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 499 612
IPR000330 SNF2_N 199 477
IPR009462 DUF1086 828 958
IPR009463 DUF1087 746 795
IPR023780 Chromo_domain 17 47
IPR023780 Chromo_domain 84 132
No external refs found!