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  5. Solyc06g068210

Solyc06g068210


Description : Protein FAR1-RELATED SEQUENCE 8 (AHRD V3.3 *** W9RSB0_9ROSA)


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g068210
Cluster HCCA clusters: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
Bradi2g26120 No alias FAR1-related sequence 5 0.03 Orthogroups_2024-Update
Bradi5g09126 No alias FAR1-related sequence 5 0.02 Orthogroups_2024-Update
Bradi5g21820 No alias FAR1-related sequence 5 0.04 Orthogroups_2024-Update
Glyma.02G273500 No alias FAR1-related sequence 3 0.04 Orthogroups_2024-Update
Glyma.09G039300 No alias FAR1-related sequence 11 0.03 Orthogroups_2024-Update
HORVU5Hr1G056070.1 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os01g19050 No alias transposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g06820 No alias transposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g45300 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g25320 No alias transposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g39680 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g49550 No alias transposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g40310 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g06380 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Potri.003G031400 No alias FAR1-related sequence 6 0.04 Orthogroups_2024-Update
Potri.016G018100 No alias FAR1-related sequence 2 0.02 Orthogroups_2024-Update
Potri.016G018300 No alias far-red elongated hypocotyls 3 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
BP GO:0006470 protein dephosphorylation IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007527 Znf_SWIM 632 657
IPR004330 FAR1_DNA_bnd_dom 741 814
IPR004330 FAR1_DNA_bnd_dom 134 217
IPR018289 MULE_transposase_dom 939 1012
IPR018289 MULE_transposase_dom 337 423
No external refs found!