1. Home
  2. Species
  3. Klebsormidium nitens
  4. Sequence
  5. Kfl00145_0070

Kfl00145_0070 (kfl00145_0070_v1.1)


Aliases : kfl00145_0070_v1.1

Description : (at3g04500 : 204.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition motif-related (InterPro:IPR015464); BEST Arabidopsis thaliana protein match is: oligouridylate binding protein 1B (TAIR:AT1G17370.1); Has 13292 Blast hits to 10995 proteins in 692 species: Archae - 0; Bacteria - 989; Metazoa - 6848; Fungi - 1697; Plants - 2705; Viruses - 0; Other Eukaryotes - 1053 (source: NCBI BLink). & (reliability: 408.0) & (original description: no original description)


Gene families : OG_42_0003045 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003045_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00145_0070
Cluster HCCA clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Brara.C03055.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G365100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc04g010040 No alias RNA-binding protein (AHRD V3.3 *** A0A0K9NRG1_ZOSMR) 0.02 Orthogroups_2024-Update
Sopen04g005130 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0070449 elongin complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 176 245
No external refs found!