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  5. Kfl00157_0140

Kfl00157_0140 (kfl00157_0140_v1.1)


Aliases : kfl00157_0140_v1.1

Description : (at1g24706 : 704.0) Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.; THO2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: THO complex, subunitTHOC2, C-region (InterPro:IPR021418), THO complex, subunitTHOC2, N-region (InterPro:IPR021726). & (reliability: 1408.0) & (original description: no original description)


Gene families : OG_42_0005064 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005064_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Klebsormidium release: Kfl00157_0140
Cluster HCCA clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
173562 No alias THO2 0.05 Orthogroups_2024-Update
At1g24706 No alias THO complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IAT2] 0.02 Orthogroups_2024-Update
Bradi1g24950 No alias THO2 0.03 Orthogroups_2024-Update
Bradi2g58697 No alias THO2 0.05 Orthogroups_2024-Update
Cre12.g507700 No alias THO2 0.01 Orthogroups_2024-Update
Glyma.05G241400 No alias THO2 0.02 Orthogroups_2024-Update
Glyma.08G048400 No alias THO2 0.03 Orthogroups_2024-Update
HORVU3Hr1G093430.2 No alias component *(THOC2/Tho2) of mRNP trafficking THO subcomplex 0.02 Orthogroups_2024-Update
Mp1g20320.1 No alias component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.02 Orthogroups_2024-Update
Pp1s80_87V6 No alias tho complex 2 0.01 Orthogroups_2024-Update
Seita.5G427500.1 No alias component *(THOC2/Tho2) of mRNP trafficking THO subcomplex 0.03 Orthogroups_2024-Update
Sobic.003G401600.1 No alias component *(THOC2/Tho2) of mRNP trafficking THO subcomplex 0.02 Orthogroups_2024-Update
Solyc05g017890 No alias THO complex subunit 2 (AHRD V3.3 *-* A0A0B2Q9L7_GLYSO) 0.02 Orthogroups_2024-Update
Sopen05g014610 No alias hypothetical protein 0.04 Orthogroups_2024-Update
evm.model.tig00001428.15 No alias (at1g24706 : 246.0) Encodes a component of the putative... 0.02 Orthogroups_2024-Update
evm.model.tig00001636.2 No alias (at1g24706 : 142.0) Encodes a component of the putative... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0003951 NAD+ kinase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006471 protein ADP-ribosylation IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006741 NADP biosynthetic process IEP Predicted GO
BP GO:0007031 peroxisome organization IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR032302 THOC2_N 487 636
IPR032302 THOC2_N 275 456
IPR032302 THOC2_N 90 254
IPR021418 THO_THOC2_C 987 1311
IPR021726 THO_THOC2_N 650 724
No external refs found!