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  5. Solyc06g069230

Solyc06g069230


Description : DNA mismatch repair protein (AHRD V3.3 *** Q6DQL7_PETHY)


Gene families : OG_42_0006421 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006421_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g069230
Cluster HCCA clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Cre01.g003463 No alias MUTS homolog 2 0.05 Orthogroups_2024-Update
GRMZM2G056075 No alias MUTS homolog 2 0.03 Orthogroups_2024-Update
Kfl00626_0050 kfl00626_0050_v1.1 (at3g18524 : 1095.0) Encodes a DNA mismatch repair... 0.05 Orthogroups_2024-Update
Mp4g08420.1 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.02 Orthogroups_2024-Update
Sopen06g026490 No alias MutS domain V 0.04 Orthogroups_2024-Update
evm.model.contig_3436.5 No alias (at3g18524 : 456.0) Encodes a DNA mismatch repair... 0.03 Orthogroups_2024-Update
evm.model.tig00001224.8 No alias (at3g18524 : 614.0) Encodes a DNA mismatch repair... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006298 mismatch repair IEA InterProScan predictions
MF GO:0030983 mismatched DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003896 DNA primase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009147 pyrimidine nucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009200 deoxyribonucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009211 pyrimidine deoxyribonucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009219 pyrimidine deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
BP GO:0019692 deoxyribose phosphate metabolic process IEP Predicted GO
CC GO:0032299 ribonuclease H2 complex IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
CC GO:0042555 MCM complex IEP Predicted GO
BP GO:0046080 dUTP metabolic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007860 DNA_mmatch_repair_MutS_con_dom 143 283
IPR007696 DNA_mismatch_repair_MutS_core 299 606
IPR007695 DNA_mismatch_repair_MutS-lik_N 23 128
IPR007861 DNA_mismatch_repair_MutS_clamp 469 565
IPR000432 DNA_mismatch_repair_MutS_C 662 859
No external refs found!