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  5. Kfl00160_0200

Kfl00160_0200 (kfl00160_0200_v1.1)


Aliases : kfl00160_0200_v1.1

Description : (at2g06990 : 1082.0) encodes a putative DExH-box RNA helicase that acts redundantly with HEN1, HUA1, and HUA2 in the specification of floral organ identity in the third whorl.; hua enhancer 2 (HEN2); CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase, ATP-dependent, SK12/DOB1 protein (TAIR:AT1G59760.1); Has 9841 Blast hits to 8173 proteins in 1240 species: Archae - 753; Bacteria - 3176; Metazoa - 1197; Fungi - 1159; Plants - 489; Viruses - 32; Other Eukaryotes - 3035 (source: NCBI BLink). & (reliability: 2164.0) & (original description: no original description)


Gene families : OG_42_0001297 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00160_0200
Cluster HCCA clusters: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
174598 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
Brara.A02352.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.02 Orthogroups_2024-Update
MA_10437134g0010 No alias (at3g46960 : 381.0) RNA helicase, ATP-dependent,... 0.02 Orthogroups_2024-Update
PSME_00022970-RA No alias (at2g06990 : 1419.0) encodes a putative DExH-box RNA... 0.02 Orthogroups_2024-Update
Pp1s406_14V6 No alias dead deah box rna helicase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0007030 Golgi organization IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR025696 rRNA_proc-arch_dom 543 803
IPR012961 Ski2_C 835 1004
IPR001650 Helicase_C 405 484
IPR011545 DEAD/DEAH_box_helicase_dom 84 230
No external refs found!