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Aliases : kfl00170_0060_v1.1
Description : (q9xhs0|rs12_horvu : 207.0) 40S ribosomal protein S12 - Hordeum vulgare (Barley) & (at2g32060 : 173.0) Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT1G15930.1); Has 951 Blast hits to 951 proteins in 327 species: Archae - 187; Bacteria - 0; Metazoa - 313; Fungi - 169; Plants - 131; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink). & (reliability: 346.0) & (original description: no original description)
Gene families : OG_42_0002151 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002151_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Klebsormidium release: Kfl00170_0060 | |
| Cluster | HCCA clusters: Cluster_24 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 441919 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.12 | Orthogroups_2024-Update | |
| At2g32060 | No alias | 40S ribosomal protein S12... | 0.03 | Orthogroups_2024-Update | |
| Bradi1g06520 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.1 | Orthogroups_2024-Update | |
| Bradi1g53740 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.11 | Orthogroups_2024-Update | |
| Brara.D01947.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Brara.F01106.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.08 | Orthogroups_2024-Update | |
| Brara.H02521.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.09 | Orthogroups_2024-Update | |
| Brara.I04904.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.1 | Orthogroups_2024-Update | |
| Cre04.g214503 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.11 | Orthogroups_2024-Update | |
| GRMZM2G063340 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.06 | Orthogroups_2024-Update | |
| Glyma.07G023900 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.05 | Orthogroups_2024-Update | |
| Glyma.08G217700 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.05 | Orthogroups_2024-Update | |
| Glyma.13G369700 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.15G003700 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.06 | Orthogroups_2024-Update | |
| HORVU2Hr1G053290.6 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.07 | Orthogroups_2024-Update | |
| HORVU5Hr1G103330.3 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.1 | Orthogroups_2024-Update | |
| LOC_Os07g05580 | No alias | ribosomal protein L7Ae, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| MA_16920g0010 | No alias | (q9xhs0|rs12_horvu : 225.0) 40S ribosomal protein S12 -... | 0.02 | Orthogroups_2024-Update | |
| Mp7g11470.1 | No alias | component RPS12 of SSU proteome | 0.05 | Orthogroups_2024-Update | |
| PSME_00017034-RA | No alias | (q9xhs0|rs12_horvu : 220.0) 40S ribosomal protein S12 -... | 0.02 | Orthogroups_2024-Update | |
| Potri.001G046600 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.05 | Orthogroups_2024-Update | |
| Potri.002G056200 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.04 | Orthogroups_2024-Update | |
| Pp1s194_130V6 | No alias | 40s ribosomal protein s12 | 0.06 | Orthogroups_2024-Update | |
| Pp1s26_289V6 | No alias | 40s ribosomal protein s12 | 0.02 | Orthogroups_2024-Update | |
| Seita.1G205300.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.16 | Orthogroups_2024-Update | |
| Seita.2G088300.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.06 | Orthogroups_2024-Update | |
| Seita.3G235300.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.08 | Orthogroups_2024-Update | |
| Sobic.002G081600.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.14 | Orthogroups_2024-Update | |
| Sobic.009G144300.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.08 | Orthogroups_2024-Update | |
| Sobic.009G242400.1 | No alias | component *(eS12) of small ribosomal-subunit (SSU) proteome | 0.11 | Orthogroups_2024-Update | |
| Solyc01g103800 | No alias | 40S ribosomal protein S12 (AHRD V3.3 *** K4B1V5_SOLLC) | 0.04 | Orthogroups_2024-Update | |
| Solyc12g042650 | No alias | 40S ribosomal protein S12 (AHRD V3.3 *** M1CSI4_SOLTU) | 0.16 | Orthogroups_2024-Update | |
| Sopen01g046200 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | 0.12 | Orthogroups_2024-Update | |
| Sopen12g021800 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | 0.12 | Orthogroups_2024-Update | |
| evm.model.contig_3478.2 | No alias | (q9xhs0|rs12_horvu : 146.0) 40S ribosomal protein S12 -... | 0.17 | Orthogroups_2024-Update | |
| evm.model.tig00020903.34 | No alias | (q9xhs0|rs12_horvu : 149.0) 40S ribosomal protein S12 -... | 0.09 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000272 | polysaccharide catabolic process | IEP | Predicted GO |
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0004112 | cyclic-nucleotide phosphodiesterase activity | IEP | Predicted GO |
| MF | GO:0004332 | fructose-bisphosphate aldolase activity | IEP | Predicted GO |
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Predicted GO |
| MF | GO:0004555 | alpha,alpha-trehalase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005622 | intracellular | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Predicted GO |
| BP | GO:0005976 | polysaccharide metabolic process | IEP | Predicted GO |
| BP | GO:0005984 | disaccharide metabolic process | IEP | Predicted GO |
| BP | GO:0005991 | trehalose metabolic process | IEP | Predicted GO |
| BP | GO:0006090 | pyruvate metabolic process | IEP | Predicted GO |
| BP | GO:0006096 | glycolytic process | IEP | Predicted GO |
| BP | GO:0006165 | nucleoside diphosphate phosphorylation | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006757 | ATP generation from ADP | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| MF | GO:0008081 | phosphoric diester hydrolase activity | IEP | Predicted GO |
| BP | GO:0008150 | biological_process | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| BP | GO:0009056 | catabolic process | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009166 | nucleotide catabolic process | IEP | Predicted GO |
| BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009311 | oligosaccharide metabolic process | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| MF | GO:0015927 | trehalase activity | IEP | Predicted GO |
| CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
| BP | GO:0016052 | carbohydrate catabolic process | IEP | Predicted GO |
| MF | GO:0016160 | amylase activity | IEP | Predicted GO |
| MF | GO:0016161 | beta-amylase activity | IEP | Predicted GO |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Predicted GO |
| MF | GO:0016832 | aldehyde-lyase activity | IEP | Predicted GO |
| BP | GO:0019359 | nicotinamide nucleotide biosynthetic process | IEP | Predicted GO |
| BP | GO:0019363 | pyridine nucleotide biosynthetic process | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0042866 | pyruvate biosynthetic process | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044262 | cellular carbohydrate metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0046031 | ADP metabolic process | IEP | Predicted GO |
| BP | GO:0046939 | nucleotide phosphorylation | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901575 | organic substance catabolic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004038 | Ribosomal_L7Ae/L30e/S12e/Gad45 | 31 | 124 |
| No external refs found! |