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  5. Kfl00179_0260

Kfl00179_0260 (kfl00179_0260_v1.1)


Aliases : kfl00179_0260_v1.1

Description : (at3g10010 : 280.0) Encodes a protein with DNA glycosylase activity that is involved in maintaining methylation marks.; demeter-like 2 (DML2); FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, catalytic activity, endonuclease activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: demeter-like 1 (TAIR:AT2G36490.1); Has 3292 Blast hits to 3211 proteins in 1332 species: Archae - 246; Bacteria - 2331; Metazoa - 80; Fungi - 82; Plants - 273; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink). & (reliability: 560.0) & (original description: no original description)


Gene families : OG_42_0001291 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001291_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00179_0260
Cluster HCCA clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
A4A49_13139 No alias transcriptional activator demeter 0.01 Orthogroups_2024-Update
At2g36490 No alias Protein ROS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJQ6] 0.03 Orthogroups_2024-Update
Bradi4g08870 No alias HhH-GPD base excision DNA repair family protein 0.07 Orthogroups_2024-Update
Glyma.03G190800 No alias HhH-GPD base excision DNA repair family protein 0.04 Orthogroups_2024-Update
Glyma.13G151000 No alias demeter-like 1 0.02 Orthogroups_2024-Update
MA_111413g0010 No alias (at5g04560 : 155.0) Encodes a DNA glycosylase DEMETER... 0.01 Orthogroups_2024-Update
Pp1s226_20V6 No alias dna glycosylase 0.03 Orthogroups_2024-Update
Seita.1G164200.1 No alias methylcytosine-specific DNA glycosylase *(ROS1) &... 0.02 Orthogroups_2024-Update
Seita.1G164500.1 No alias methylcytosine-specific DNA glycosylase *(ROS1) 0.03 Orthogroups_2024-Update
Seita.2G152900.1 No alias methylcytosine-specific DNA glycosylase *(ROS1) 0.03 Orthogroups_2024-Update
Sobic.004G149800.1 No alias methylcytosine-specific DNA glycosylase *(ROS1) &... 0.01 Orthogroups_2024-Update
Sobic.006G224100.1 No alias methylcytosine-specific DNA glycosylase *(ROS1) 0.02 Orthogroups_2024-Update
Sobic.008G085300.1 No alias methylcytosine-specific DNA glycosylase *(ROS1) &... 0.03 Orthogroups_2024-Update
Solyc03g123440 No alias DNA demethylase 4 0.02 Orthogroups_2024-Update
Solyc09g009080 No alias DNA demethylase1 0.03 Orthogroups_2024-Update
Solyc10g083630 No alias DNA demethylase 2 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0007031 peroxisome organization IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0010024 phytochromobilin biosynthetic process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0032947 protein-containing complex scaffold activity IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0050897 cobalt ion binding IEP Predicted GO
BP GO:0051202 phytochromobilin metabolic process IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR028925 RRM_DME 1742 1841
No external refs found!