1. Home
  2. Species
  3. Klebsormidium nitens
  4. Sequence
  5. Kfl00188_0100

Kfl00188_0100 (kfl00188_0100_v1.1)


Aliases : kfl00188_0100_v1.1

Description : (at1g23400 : 154.0) Promotes the splicing of chloroplast group II introns.; CAF2; FUNCTIONS IN: RNA binding; INVOLVED IN: Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT2G20020.1); Has 265 Blast hits to 223 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 261; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 308.0) & (original description: no original description)


Gene families : OG_42_0001286 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001286_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00188_0100
Cluster HCCA clusters: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
HORVU6Hr1G020050.20 No alias mCSF mitochondrial RNA splicing factor 0.02 Orthogroups_2024-Update
Sobic.007G065700.1 No alias mCSF mitochondrial RNA splicing factor 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 662 734
No external refs found!