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  5. Solyc06g071020

Solyc06g071020


Description : Pectate lyase (AHRD V3.3 *** K4C8H5_SOLLC)


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g071020
Cluster HCCA clusters: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
A4A49_31246 No alias putative pectate lyase 12 0.03 Orthogroups_2024-Update
Potri.003G175900 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.011G008100 No alias root hair specific 14 0.03 Orthogroups_2024-Update
Solyc06g083580 No alias Pectate lyase (AHRD V3.3 *** A0A022QXK5_ERYGU) 0.03 Orthogroups_2024-Update
Sopen02g025600 No alias Pectate lyase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009664 plant-type cell wall organization IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR007524 Pec_lyase_N 24 76
IPR002022 Pec_lyase 187 352
No external refs found!