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  5. Kfl00210_0140

Kfl00210_0140 (kfl00210_0140_v1.1)


Aliases : kfl00210_0140_v1.1

Description : (at3g12810 : 1028.0) Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).; PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: SWI/SNF complex, cell wall, chromatin remodeling complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: HSA (InterPro:IPR006562), HAS subgroup (InterPro:IPR013999), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), SNF2-related (InterPro:IPR000330), MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: INO80 ortholog (TAIR:AT3G57300.1); Has 42311 Blast hits to 26312 proteins in 2357 species: Archae - 246; Bacteria - 10217; Metazoa - 11172; Fungi - 7336; Plants - 2916; Viruses - 500; Other Eukaryotes - 9924 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 293.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 2056.0) & (original description: no original description)


Gene families : OG_42_0005242 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005242_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00210_0140
Cluster HCCA clusters: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
Bradi1g57635 No alias SNF2 domain-containing protein / helicase... 0.03 Orthogroups_2024-Update
Cre14.g618860 No alias SNF2 domain-containing protein / helicase... 0.02 Orthogroups_2024-Update
Glyma.02G174100 No alias SNF2 domain-containing protein / helicase... 0.02 Orthogroups_2024-Update
Glyma.09G112200 No alias SNF2 domain-containing protein / helicase... 0.02 Orthogroups_2024-Update
MA_64269g0010 No alias (at3g12810 : 204.0) Encodes a protein similar to... 0.02 Orthogroups_2024-Update
Seita.1G278400.1 No alias ATPase component *(PIE1) of SWR1 chromatin remodeling complex 0.02 Orthogroups_2024-Update
evm.model.tig00000194.26 No alias (at3g12810 : 251.0) Encodes a protein similar to... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
BP GO:0000726 non-recombinational repair IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004659 prenyltransferase activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006528 asparagine metabolic process IEP Predicted GO
BP GO:0006529 asparagine biosynthetic process IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008318 protein prenyltransferase activity IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0018342 protein prenylation IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
MF GO:0051920 peroxiredoxin activity IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
BP GO:0097354 prenylation IEP Predicted GO
InterPro domains Description Start Stop
IPR000330 SNF2_N 1341 1615
IPR014012 HSA_dom 551 613
IPR001650 Helicase_C 1897 2009
No external refs found!